Gymnogyps californianus (California condor): 127019011
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Entry
127019011 CDS
T08687
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
gcl
Gymnogyps californianus (California condor)
Pathway
gcl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
127019011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gcl03400
]
127019011
Enzymes [BR:
gcl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
127019011
DNA repair and recombination proteins [BR:
gcl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
127019011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
DUF2948
Motif
Other DBs
NCBI-GeneID:
127019011
NCBI-ProteinID:
XP_050756838
LinkDB
All DBs
Position
1:complement(63901646..63906003)
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AA seq
912 aa
AA seq
DB search
MASTPASQPSPKKTVASHVPFADLCSTLERIQTCKSRPEKTKYFKDFLDSWRKFHDALHQ
KDKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTP
AGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNVAKNKGQLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAVELHNVTTDLEKVCIQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMNNQLFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHNVFKSNIQNCILDGEMMAYNPETQTFMQKGNRFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILSSVFTPVPGRIHVVRKKSARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYINGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPPPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPP
CNILCGTEKPEMYIEPWNSVIVQIKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAEGKLASKHLHVDEYDEPQEKKRKTVSKVKKIIGIAEQFKAPDLSSVNKV
SNVFEDVEFCVMTGTGKYSKSELESRIAECGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTADTDVAQLK
EVFSRMKDSKVMPLDMIAVLEERYSWNSHQLSIFRGNTIYVDCYAAVNEPTTKIHGTTLS
IRALELRFYGAKVVSHLEEGVSHVVIGEDCSRVKEMKALRRTFGKKFKIVSELWVTQSVE
EGVPKNENQYLI
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttccacgcctgcttcacagccttctcctaaaaaaacggtggcctctcacgtgcct
tttgcggatctgtgttctactctggagcgaatacagacatgtaaatctcgtccagagaaa
actaagtacttcaaggattttctggattcctggagaaaattccatgatgctcttcatcaa
aaagacaaagacgtcacagattctttttatccagctatgcgacttattcttccacagttg
gaaagagaaaggatggcatatggaattaaagaaactatgcttgcgaagctgtatattgaa
ctgcttaatttaccaaaagatggaaaagatgctgcgaagcttttaaattacagaacacct
gctggctcacgtggagatgctggagattttgcaatgattgcatattttgtgttaaaacct
aggagtccaaaacaaggcagattgacaatagaacaagtcaatgaacacttagatgcgata
gctaataataatgttgctaaaaacaagggtcagttaaagaaaagtcttcttcagttaatt
acccagagcacagcattggaacaaaaatggctcatccggatgattataaaggatctaaag
cttggtgttagtcaacaaactatattttccatttttcatcctgatgctgttgaattacac
aacgtcacaactgatttggagaaagtttgcatacaactgcatgatccctctgtctcactt
agtgatgtttctatcatgttgttttctgcctttaaaccaatgctcgctgctattgctgat
gtccagcaaattgagaaacaaatgaataaccagctattctacatagaaactaagctggat
ggtgagcgtatgcagatgcacaaagatggagatgtgtataaatatttttcccgaaatggg
tttgactatactcagcagttcggtgcttccccccttgatggttccttaacgccatttatt
cataatgtttttaagagcaacatacaaaattgcattctcgatggtgaaatgatggcttac
aatcctgagacgcaaacctttatgcaaaaaggaaacagatttgacataaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtgttcgatgtattgatggttaacgatcag
aagttggggcacgaagtactaagcaaaagatacgaaatcttaagtagtgtatttaccccg
gtaccgggcaggatacatgttgtacgtaaaaaaagtgccagaacaagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggaagggattatggtgaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccggaatacatc
aatgggctgatggatgaactagaccttttaattgttggtggttactgggggaagggctca
cgtggcggaatgatgtctcattttctgtgcgctattgcagagacgccccctccaaatgaa
aaacctaccgttttccactctatttgtcgtgttggctctggctatactatgaaggaattg
tatgatctaggtttgaaactggctaaacactggaagccctaccataggaaggaccctccc
tgtaacattttgtgtggaactgaaaaacctgaaatgtacattgaaccttggaactctgtc
atagttcagatcaaggcagccgagattgttaacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgagaagataagagaggacaaagaatggtacgagtgcatgact
tcagacatgttagaagatctcagaagcaaagcagaagggaagttggcatctaagcacctt
catgtagatgagtatgatgagccacaagagaaaaaaaggaaaacggtatcaaaggtgaag
aagataattggaatagctgagcaatttaaagctcctgatctttctagtgtaaacaaggtt
tcaaatgtatttgaagatgttgagttttgtgttatgacaggaacgggaaaatattcaaag
tctgaactggaaagcagaatagccgaatgtggtggcagcgtggtacagaacccggggcca
gagacttactgtgtcattgtaggagctgagaatgtcagagtgaaaaacatcatcgcttcc
aacaaatacgatgtggtgagggcagagtggctccttcagtgttttcaaaccaaaatgctg
gtgccttggcagccagcctttatgattcacatgtctccagacacaaaagaacattttgct
cgtgagtatgattgttatggagacagctacacagcagacacagatgttgcacaactcaag
gaagtgttctcaagaatgaaagacagtaaggtgatgcctttggacatgattgcagtgtta
gaagaacgctattcatggaacagccatcagctcagtatattcagaggaaacactatttat
gtggactgttatgctgctgttaatgagcccacaaccaaaatccatggaacaacactatca
attagagctttggagctccgtttttatggtgcaaaagtagtctctcaccttgaagagggt
gtctcccatgttgttataggagaagattgttcccgggtaaaagagatgaaagcactcagg
agaacatttgggaaaaaatttaaaatcgtatctgagctgtgggtaacacagtcagtggag
gaaggagtcccaaagaatgaaaatcagtacttaatttaa
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