Gymnogyps californianus (California condor): 127025416
Help
Entry
127025416 CDS
T08687
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
gcl
Gymnogyps californianus (California condor)
Pathway
gcl03013
Nucleocytoplasmic transport
gcl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127025416
03015 mRNA surveillance pathway
127025416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gcl03019
]
127025416
Enzymes [BR:
gcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127025416
5.6.2.5 RNA 5'-3' helicase
127025416
Messenger RNA biogenesis [BR:
gcl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127025416
mRNA cycle factors
Common to processing body (P body) and stress granule
127025416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
127025416
NCBI-ProteinID:
XP_050766337
LinkDB
All DBs
Position
24:complement(1553606..1577072)
Genome browser
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQG
PPGAGQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcactctc
cccagccagacccaaaccccgcccgggcccgggcaggcggggccgggacagggccaaggg
ccccccggagcggggcagggaccgccaggaccgatcgaagcacaggttaatggccctgat
ggcattctacagaatggagctgtggatgataatgtggctaaaaccagccagcttctggca
gagttgaattttgaagaagatgaagaagatacctattacacaaaggatcttcctgtgcat
gcttgcagttactgtggtatccatgaccctgcttgtgtggtttactgtaacaccagcaaa
aagtggttctgtaatgggcgtggaaatacatctggcagccacattgttaatcatcttgtg
agagcgaagtgcaaagaggtgactctccataaagatggacctctaggagagactgtcttg
gaatgttataactgtggatgtcgtaatgtgtttctccttggctttattccagctaaggca
gactccgtggttgttttgctgtgcaggcagccatgtgccagtcagagcagtttaaaggat
attaattgggacagttcacagtggcagcctcttatccaagatcgctgtttcctttcatgg
ctggtaaagattccgtctgaacaggaacagttgagagcacgtcagattacagctcaacag
attaacaaactggaagaactctggaaggaaaatccatctgcaacccttgaggacttagaa
aagcctggtgttgatgaagaaccgcagcatgtcctgcttagatatgaagatgcttatcaa
taccaaaatatatttggtcctctagtcaagcttgaggcagactatgacaagaaactcaag
gagtctcagacccaagataacatcacagtcagatgggacctgggcttgaacaagaaaaga
attgcttatttcactttgccaaagactgattcagatatgcgtcttatgcaaggagatgag
atctgcttgaggtataaaggagacctggcccctttatggaaaggaattggtcatgttatc
aaagttcctgatagttctacagattatggtgatgagatagccattgagctgaggagcagc
gttggagcgcctgtggaagttactcataacttccaagtggattttgtatggaagtctact
tcatttgacagaatgcagagtgctttaaaaacgtttgctgtggatgagacttcggtgtct
gggtacatctatcacaaactgttaggtcatgaggtagaagatgtaattattaaatgccag
ttgccaaagcgctttacagcgcaaggacttcctgatctcaaccattctcaggtttatgct
gtgaagactgtcctgcagcgtcctctgagccttattcagggtccccctggtaccggaaaa
acagtgacatcagccacaattgtctatcatctggctagacagggcaatgggcctgtgtta
gtctgtgctccaagtaatatagctgtagatcagttgactgagaagatccatcaaactgga
ctgaaagtggttcgtctgtgtgctaaaagtcgtgaggcaattgactctcctgtatccttc
ttggcattgcataaccagatcagaaacatggatagtatgcctgagcttcagaaactgcag
cagcttaaagatgaaactggagaactgtcatctgctgatgagaaacgttaccgtgcactg
aaacgaacagcagagcgtgaattacttatgaatgcagatgtgatctgttgcacgtgtgta
ggagctggtgatccaagacttgcaaaaatgcagttccgctccattctgattgatgaaagc
acacaggctactgagccagagtgcatggtgccagttgtcctgggagcaaaacagcttatt
cttgtgggtgaccactgccaacttggtcctgttgtgatgtgtaaaaaagctgcaaaggct
ggcctatctcagtctctcttcgagaggcttgtggtgctggggattcgtccgattcgcctg
caagtgcagtatcgcatgcatcctgcacttagtgcttttccatccaatatcttctatgag
ggttcactccagaatggtgttactgcagcggaccgtgtgaaaaaaggttttgatttccag
tggccacagccagataagccaatgtttttctacgttacgcaaggacaggaagaaattgcc
agctcaggcacctcttacttaaacaggacggaagctgccaatgtggagaagataactaca
aagctattgaaagctggtgccaaaccagatcagattggcattattactccttatgaaggt
caaagatcctatctggtgcagtacatgcaattcagtggttccttgcatacaaagctctac
caggaagtggaaattgcaagtgtggatgccttccagggccgagagaaggactttattatc
ctttcttgtgtgagggccaatgaacaccaaggaatagggtttctgaatgaccccaggcgt
cttaatgtagctcttacaagagcaaggtatggagtaattattgttgggaacccaaaagcg
ctgtctaaacaaccactttggaatcacctgctgaattactacaaggagcagaaggttctg
gtggagggaccactgaataacctccgggaaagccttatgcagttcagcaagccccggaaa
cttgtcaataccatcaacccaggtgcccgtttcatgactactgccatgtatgatgcacgt
gaggctattattccaggatctgtctatgaccggagcagtcaagggcgcccatccaacatg
tacttccagacccacgaccagatcgggatgattagtgctggccccagccatgtcactgct
atgaacattcctatccctttcaaccttgtgatgccaccgatgccaccgccgggatacttt
ggccaggctaacggaccagccgcagggcgtggggcgccaaaaggaaagactggtcgtggt
gggcgccagaaaaatcgttttgggattcctggaactagtcagtcaaaccttccaaatagt
caagcgagccaagatgtggtgtcccagcctttctcccagggtccactgactcaggggtat
atctccatgagtcagccatcacagatgagtcagcctgggctctcccaaccagaattatca
caggacagttaccttggtgatgagtttaaatctcagattgacgtggcgctgtcacaggac
tctacttaccagggtgaacgtgcatatcaacatggtggagtgacgggactgtcacagtat
tag
DBGET
integrated database retrieval system
