Gracilibacillus caseinilyticus: MUN88_01185
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Entry
MUN88_01185 CDS
T09432
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
gcs
Gracilibacillus caseinilyticus
Brite
KEGG Orthology (KO) [BR:
gcs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gcs03009
]
MUN88_01185 (rlmD)
Enzymes [BR:
gcs01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MUN88_01185 (rlmD)
Ribosome biogenesis [BR:
gcs03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MUN88_01185 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Met_10
Cons_hypoth95
MTS
Methyltransf_25
Methyltransf_15
PrmA
N6_N4_Mtase
Methyltransf_4
Methyltransf_32
Saf-Nte_pilin
PCMT
Methyltr_RsmB-F
UPF0020
Ubie_methyltran
FtsJ
Motif
Other DBs
NCBI-ProteinID:
UOQ48803
LinkDB
All DBs
Position
complement(265994..267478)
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AA seq
494 aa
AA seq
DB search
MNKSKKNGYKPGKTRNQSKKTYGKKRSALTYQKGDKFHGKPSTTNKRRGNKKSETLVVTC
TGLTNEGKGIVQWKGKQLEVEHLLPGETAEITLSTSGRYVHTELKRVITSSKDRIKPICS
YYYDCGGCQLQHMNEQAQEGFKQETIDKLMKPFGKPEPILTMDHPYDYRNKSHTTFGLNK
ERQIIGGLYAQNSHQLISMDRCLIHDPKADEIWQTIKNMMKSFKMQPYNEDTGRGFLRHV
LVKVGKVSGEIMVVLVVASPIFKGKNNFVKALRKAHPEITTILMNVNNRNTSMVLGDQEK
VLFGKGTITDTLCGMKFDISAKSFYQINPVQTEKLYAKAIEMAKLSGSETVIDAYCGIGT
IGLIASQKAGKVIGVELNKDAVRDAIRNSKRNGVKNARFYQGDSGEFMMEMAARGKKADV
VIMDPPRSGSDEAFLSSVVKLKPERIVYVSCNPVTQVRDMRYLVQNGYKVTEMQPVDMFP
QTVHVECVALIELK
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaagcaaaaagaatggatataaaccgggaaaaacacgcaatcaatcgaaaaaa
acatatgggaaaaagcgctccgcactgacttatcaaaagggcgacaaattccatggtaag
ccctcgacaacaaataagcgtcgaggtaataagaaatctgaaaccttagtggtgacctgc
acaggcctgaccaatgaggggaaaggcatcgttcagtggaaaggaaagcagctagaggta
gagcatctattgccaggtgaaacggctgagattactttgtccactagtgggcgatatgtt
catacggaattgaagcgggtaatcacctcgtcaaaagaccggattaagccaatatgctcc
tattactatgattgtgggggatgtcagctgcagcatatgaacgagcaggctcaggaaggt
ttcaagcaggaaacaatagataaattgatgaaaccattcggtaaaccagaacccatttta
acgatggaccatccgtatgattaccggaacaagagccatacaacatttggtctgaataag
gaacggcagattattggtgggctatacgctcagaatagtcatcagcttatctcgatggat
cggtgtctcattcacgatccgaaagcggatgagatttggcaaacgattaagaacatgatg
aagtcctttaaaatgcagccatataatgaagacactggacgaggcttcctgcgtcacgta
ctggtgaaggtcggcaaggtcagtggtgagatcatggtggtgctggttgtagcttcacct
atttttaaagggaagaataattttgtaaaagctcttaggaaggctcacccagagattacg
accatcctcatgaacgttaataaccggaatacgagcatggttctaggtgatcaggagaaa
gtgttgttcggtaaagggactataacagacaccctttgtggaatgaagtttgatatttcc
gcgaaatccttctatcagattaacccggtccagacggaaaagttatatgcaaaagccatt
gaaatggccaagttgtctggaagtgaaaccgtaattgatgcgtactgtgggatcggtaca
attggtctgattgctagtcaaaaggctggcaaagtcattggggtagagttgaataaggat
gctgttcgagacgcaatccgcaattcaaagcgcaacggcgtgaaaaatgcccgtttctat
caaggcgattccggcgaattcatgatggagatggcagcacgtggtaagaaagcagatgta
gtaattatggatccaccacgaagcggaagtgatgaagcattcttgtctagtgttgttaag
cttaagccggaacgtatagtttatgtgtcctgcaatccggtgacacaggtgcgggatatg
agatatttagtacagaacggatataaggtaacagagatgcagccagtggatatgtttcca
cagacggtgcacgtggagtgtgtagcgttgatagagttaaaatag
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