Geobacillus sp. C56-T3: GC56T3_3189
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Entry
GC56T3_3189 CDS
T01245
Name
(GenBank) alpha amylase catalytic region
Organism
gct
Geobacillus sp. C56-T3
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Alpha-amylase
AMPK1_CBM
CBM_20
Malt_amylase_C
fn3
Alpha-amylase_N
SusF_SusE
Big_13
Cyc-maltodext_C
NDNF
CBM_4_9
Motif
Other DBs
NCBI-ProteinID:
ADI28114
LinkDB
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Position
complement(3349832..3354814)
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AA seq
1660 aa
AA seq
DB search
MAKQRRRERGMIKRARRMLSLVLASVLLLALTPFQAVAAANEAGSSSALGNGAHRWTAES
TASQPRTITLVGNLQDELGHTAEWDPGALATRMHDEGNGLYTFTGTLPAGTYEYKIAVNG
SWDENYGVGGRNGANLVLKLDRQTEVTFYYNDRTHAIADSTWYTAIAKEKQPRLVGTVLP
AIGYEGESNGWTPGTSTALLTDDDFDSVYTFTAQVPKGSYEYKIVLGNNWNESYPQENAR
LNVLETTIITFFFNAKTKEVYTDYNPNGSDGVVQKDRLKHNTWDTLYRQPFGAVKAGTKV
TLRLAAKKGDLTKADVYVKNATTGTAKVYTMEKVGVLGDDEYWEAAFTPSAPGVYGYKFI
AVDAGMKAEYGEDTKEGQWGRAVDKNAGLFQLTVYDPNYKTPDWMKEAVVYQIFPDRFFN
GNPSNDNSKQQARGAQPIEHRDWSDLPDNPRLKGTSGYDGDGEWSNDFFGGDIAGIEQKL
DYLQSLGVNTIYLNPIANAPSNHKYDASNYKELDPMFGSPEEFQSFVQALANRGMHLILD
GVFNHVSDDSIYFDHYHRYPTVGAYEYWEAVYDLINEKGLSEEEARKQVEEKFKQEGQTF
SPYGFHLWFNIENKKVDGHYQYQSWWGYDSLPEFKSVTGEKVPNPSELNNDALANYIFRE
SDSVAKSWIARGASGWRLDVANEVDPAFWREFRQELLQGSYGRGPTLKEGEQPLILGEIW
DDASKYFLGDQYDSVMNYRFRGAVLDFLKNGNAEEADKRLTAIREDYPSEAFYALMNLIG
SHDTARAVFLLGNGTDSSERAELDPNYNEELGKKRLKLAVILQMGYPGAPTIYYGDEAGV
TGSKDPDNRRTYPWGKEDQNLLSHYQKVGHIRQHHQSLLAHGDIKTVYAQGDVYVFARQY
GREVALIAVNRGNEDKTVALDVASLLPNGTVLTDELHDGGKATVAGGTLTVTIPALDGRM
MFGAVTVEMPAAVSNLQASASDGRVMLTWEGNASRYRIYESTLKGAGYTMVQETETTSAT
IGSLTNGTAYYFAVAAVDENGNESPKVETNRVVPHYPLTSDNVQFVTTLSDATLDLSKPQ
QVDVHVNIDNVTSKGAADGLQAVLQVKGPHDETWKEYRAAYQGQDGDANVFRAAFTPLAA
GTYTYRYALTTNLGEEWMYTGEKQVTFAADNSDQIAPADAIELRQPAVESGQVNLSWTFV
GKKDGDAYLLAIERNGDIVHTTTSIGDSFTDYDVENGTEYTYVVKLYDRAGNVVASNTVK
VTPDIVMVKVIFKVKAPDYTPLDARITIPNSLNGWNTGAWEMSRNGAVTPDWQFTVEVQE
GETITYKYVKGGSWDQEGLADHTREDDNDDDVSYYGYGTIGTDLKVTVHNEGNNTMVVQD
RILRWIDMPVVIEEVQKQGSQVTIKGNAIKNGVLTINGERVPIDGRMAFSYTFAPASHQK
EVSIHIEPSAESKTAIFNNDGGAIAKNTKDYVLDLATKQLREGKLTTPPSNGDSPGSETP
SHDGGATPGNGTSPGSGGPSDGTSPGGSVPPGGTAPPGNGAPPSRPPQKPSPSKPKEKPR
KPTTPPSQVKKVYWDGVELKKGQIGRLTVQKPINLWKRTKDGRLVFVRILQPGEVYRVYG
YDARFGGQYAVGGGYYVTDIDTHIRYETPSKEKLKLVNGE
NT seq
4983 nt
NT seq
+upstream
nt +downstream
nt
ttggccaaacaaaggagaagggagcgggggatgatcaagagggcaaggagaatgctatca
ttggttttggcatcggtgttgttgctggcattgactcctttccaggcggttgccgctgcg
aacgaggcaggaagttctagcgctctagggaatggagcgcatcggtggacggccgaatcc
acggcctcgcaaccacggacgatcacgctagtcggcaatttgcaagatgagttgggccat
acggcggaatgggatccgggggcattggcgacgaggatgcatgatgaagggaatgggctt
tatacattcaccgggacgctgccagccgggacctatgagtacaaaattgcggtcaacggc
agctgggatgaaaattacggcgtcggcggccgcaatggcgcaaatctggtgttgaagctg
gatcggcaaaccgaggtgacgttttattacaatgaccggacgcatgcgatcgctgattcg
acatggtatacggcgattgcgaaggagaaacagccgcgtcttgtcgggacggtgctgccg
gccatcggctatgagggggagagcaacggatggactccggggacatcgacggcgctgttg
accgatgatgattttgactcggtgtacacgtttacggcgcaggtgccgaaaggatcgtat
gaatataaaattgtcctcggaaacaattggaacgagagctacccacaagagaatgcacgc
ttaaatgttttggaaacgacgatcattacattcttcttcaatgcgaaaacaaaagaggtg
tacaccgactacaaccccaatggctctgacggtgttgttcagaaagaccgattaaaacac
aatacatgggatacgctgtaccgccagccgtttggtgcggtgaaagcgggaacgaaggtg
acgcttcgtctggcggcgaaaaaaggcgatttgacgaaggcggatgtgtatgtgaaaaat
gcgacgaccggaaccgccaaagtctacacgatggaaaaagtcggcgtgctcggggatgat
gaatattgggaggctgcgtttaccccttctgcgccgggggtatacggttataaatttatc
gctgtcgatgccgggatgaaggcggaatatggtgaagatacgaaagaaggacaatggggg
agggcggtcgacaaaaatgcggggctgtttcagctgaccgtctatgatccgaattacaaa
acaccagattggatgaaagaagcggttgtgtatcaaattttcccggatcggttctttaat
ggcaacccttcaaatgataacagcaagcagcaggcacgcggggcgcagccgattgagcat
cgcgattggtcggatttgcccgataatccgcgcctgaaaggaacgagcggctacgatggc
gacggcgaatggtcgaatgactttttcggcggagacatcgccggaattgaacaaaagttg
gattatttgcagtcgcttggagtgaacacgatttacttaaatccgatcgccaatgcgcca
tcgaaccataaatatgatgcgagcaattacaaagaattggatccgatgttcggttccccg
gaagaattccaatcgtttgtgcaggcgcttgcgaaccgggggatgcatctcatcttagac
ggggtgttcaaccacgtatccgacgattcgatttactttgaccactaccaccgctatccg
accgtcggcgcgtatgaatattgggaagcggtttacgatttgataaatgaaaaaggattg
agcgaggaagaagcgcggaaacaagtggaagagaagttcaaacaagagggacagacgttc
agcccgtatgggtttcacctttggttcaatattgaaaacaaaaaagtcgatggccattat
caataccaatcatggtggggctatgacagtctgccggagtttaagtcggtgacgggggaa
aaagtgccgaatccgagtgaattgaacaacgatgcgctcgcgaattacattttccgtgaa
tcggattcggtggcgaaaagctggattgcccgcggcgcctccggctggcggttggatgtg
gccaatgaggtggatccggcgttttggcgcgagtttcgccaagaattgcttcaagggtcg
tacggccgcggtccgacgttaaaagagggggagcagccgctcattttaggggaaatttgg
gatgacgcatcgaaatattttctaggcgaccagtacgattccgtgatgaactaccggttc
cgcggggcggtgcttgactttttgaaaaacggaaatgcagaagaggcggacaagcgactg
acggccataagggaagactacccaagtgaagcgttttatgcgctgatgaacttaatcggt
tcgcatgacacggcgcgggcggtctttctgcttgggaacggaacggattcatccgagcgg
gcggagcttgatccgaattataatgaggaacttgggaaaaagcggctcaagctggcggtg
attttgcagatgggatacccgggagctccgacgatttattacggcgatgaagcgggagta
acaggctcaaaagacccagacaaccgccgcacgtatccgtggggcaaagaagatcaaaat
ctgttgtcccattatcagaaagtggggcacattcgccagcaccatcaatcgctgttggcc
catggcgacatcaagacggtgtatgcgcaaggggatgtatacgtatttgcccgccaatac
gggcgtgaagtggcgctcattgctgtcaaccgcggcaatgaggacaagacggtggcgctt
gacgtcgcttcgttgcttccgaatggcaccgtactcacggatgagttgcatgatggcggg
aaagctacggtcgctggcggaacgttgacggtcacgattccggccctggatggacggatg
atgtttggggcggtgacggtggaaatgccggcagcagtcagcaatttgcaggcgagcgct
tcggatggccgtgtcatgttaacgtgggaaggaaatgcgtcgagataccgaatttacgag
tccacgttaaaaggggccggttatacgatggtgcaagagacggaaacaacttcggccacg
atcggttcgttgacgaacggaacagcctattactttgccgttgcggcggtcgatgaaaac
gggaatgaatcaccgaaggtcgaaacgaatcgcgtcgttcctcattacccgctgacgagc
gacaatgtccagttcgtgacaacgttaagcgatgccacactggatttgtcaaagccgcag
caagtggatgtccatgtcaacatcgacaatgtgacaagcaaaggagcagctgatgggttg
caagcggtgttgcaagtgaaaggcccgcatgacgaaacatggaaagaatacagagcggct
taccaaggacaagacggcgacgccaacgtgttccgagctgccttcactccgctcgccgca
gggacgtatacgtatcgttatgcgctgacgaccaaccttggcgaggagtggatgtataca
ggagagaagcaagtgacgtttgcggcagacaacagcgatcaaatagcgccagcagacgcc
atcgagctgcggcagcctgcggttgaatcgggacaagtgaatttatcatggacgtttgtt
gggaaaaaagatggggatgcttatttgttagccatcgagcgcaacggtgatatcgtgcat
acaaccacttcgatcggcgattcatttacagactacgatgtcgaaaacggcaccgagtac
acgtatgttgtcaagttgtatgaccgcgccggcaatgttgtggcgtcgaacacggtcaag
gtgacgccggacattgtgatggtgaaggtgatttttaaagtgaaagcgccggattatacg
ccgctcgatgcccgcattacgattccgaacagcttgaacggctggaacacaggggcctgg
gagatgtcgcgcaacggtgcggtgacgcccgattggcaatttaccgtcgaggtgcaggaa
ggggaaacgatcacctataagtatgtgaaaggtggatcgtgggatcaagaggggttggcc
gaccatacgcgtgaggacgacaacgatgatgacgtgagctactacggctatgggacgatt
ggcaccgacttgaaagtgacggtccacaatgaaggaaacaatacgatggttgtgcaagac
cgcattttgcgttggatcgatatgccagtcgtcatcgaagaggtgcaaaaacaagggagt
caagtgacgatcaagggcaatgccattaaaaacggcgttttgacaatcaatggcgagcgg
gtgccgattgatggccggatggcattctcgtacacgtttgcgccggccagccatcaaaaa
gaagtgtcgattcatattgaaccatcggctgaaagcaaaacagccattttcaacaacgac
ggcggagcgattgcgaaaaacacgaaagattatgtgctggatttagcaacgaagcaattg
cgcgaagggaagttgacaacgccgccaagcaacggcgattctccgggaagcgaaacgccg
tcccatgacggaggggcaacaccaggcaacggcacctctccaggcagcggtggtccatcg
gatggcacatcccctggggggagcgttccgccgggcggcacagctccaccgggaaacgga
gcacctccatccagaccgccgcaaaaaccgtctccatcgaaaccaaaagagaaaccgaga
aagccaaccactcctccaagccaagtgaaaaaagtctattgggatggcgtggagctgaaa
aaagggcaaatcggccgcttgacggtgcaaaagccgatcaatctatggaaacggacgaag
gatgggcgccttgtgttcgtccgcatcttacagcctggggaagtataccgcgtctacggg
tatgacgcgcgcttcggcgggcagtacgcggtcggcggcgggtattacgtgaccgacatc
gacacgcacatccgctacgaaacgccgtcaaaggagaagttgaagttggtgaatggggag
taa
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