Gluconacetobacter diazotrophicus PA1 5 (JGI): Gdia_0109
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Entry
Gdia_0109 CDS
T00798
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gdj
Gluconacetobacter diazotrophicus PA1 5 (JGI)
Pathway
gdj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gdj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Gdia_0109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gdj03400
]
Gdia_0109
Enzymes [BR:
gdj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Gdia_0109
DNA repair and recombination proteins [BR:
gdj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Gdia_0109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_16
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACI49909
LinkDB
All DBs
Position
121799..125269
Genome browser
AA seq
1156 aa
AA seq
DB search
MRAPGTEHAGWATIWGAPDGFDAFLVARRAREHDGPVLHVARDDAGMARIGELLSFVAPN
AEILRFPSWDCLPYDRVSPNPAIVAERVATLTRLLEPATAPRIVLTTVGGLVQRVAPRAA
FRGQSLTLAAGDSLDQALLIDLLVAAGYNRTDTVMEPGEFATRGGIFDIFPSGEAEPVRL
DLFGDEVENIRRFDPATQRSSDRLDRFVMRPVADFTLDQASISRFRTGWRDLFGPAAASD
PLYEHVSDGRRHAGLEHWLPLFHEHLETLVDYLPGVSIILAHQVEDVLAARLEMIADHFE
ARRQPVREGEVPYRALPPHLMYLDRKGWDGILSGHPVMLFSPFARPDNAGGVDAGGRPGI
LFASVAGGGARENVFAMLDTQVRQWAETGRRAYVSAWTRGSRERIATLLREHGMRVETFD
GWARAQDLPPGTVGLLTLGLERGFIADNLAFVSEQDLLGERISRPPRRRKKADQFIAEAS
EIAEGDLVVHQDYGIGRYDGLETIGVGTAPHDCLRLIYDGNEKLFLPVENIELLSRFGSD
QAGVALDKLGGASWQNRKARMKQRIRDMAGELIRTAALRALREAPSMTPAEGMWDEFCAR
FPFVETEDQSRAIADVLEDMGSGRPMDRLVCGDVGFGKTEVALRAAFVAALSGAQVAVVV
PTTLLARQHFRTFSARFSGLPITVAQLSRMVTPKEATAVRKGLADGTINIVIGTHALLAK
GVQFADLELLIIDEEQHFGVAHKEKLKALREDVHVLTLSATPLPRTLQLALTGVREMSLI
ATPPTDRLAVRTFIMPFDSVVIREAIQRERFRGGQIFCVVPRIEDLDRMAARLQDIVPDA
RLVQAHGRLTPTELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLGQL
YQLRGRVGRGKQRGYAYLTWPQTHVLSAAAEKRLEVMQTLDTLGAGFTLASHDLDLRGAG
NLLGDEQSGHIREVGIELYQQMLEDAVAELRVEKGRRKAQDRDWTPNIILGLPVLIPETY
VPDLPVRLGLYRRIAGLANDAEIEAMEAELVDRFGTMPDEVRNLLDVVAIKRLCREAGVE
RLEAGPKGMVIQFRGNSFANPGGLVTWIAAHKEGNVRLRPDHKLALVREMTNAQRIRLAK
DTVQTLGRLAGQEKAA
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgagggcacccgggacggaacacgccggctgggccaccatctggggggcaccggacgga
ttcgacgcctttctggtggcacgccgggcccgcgagcatgacgggcccgtgctgcatgtc
gcacgggacgatgccggcatggcgcggatcggcgaattgctgtccttcgtcgcccccaat
gccgaaatcctgcgttttccgtcctgggactgcctgccgtacgatcgcgtgtcgcccaat
ccggcgatcgtcgccgaacgcgtcgccaccctgacgcggctgctggaaccggcgacggcg
ccgcgcatcgtgctgaccacggtcggcggcctggtccagcgcgtggcgccccgcgccgcc
tttcgcggccagtccctgaccctggccgccggcgacagcctggaccaggccctgctgatc
gacctgctggtggccgccggctacaaccgcaccgacacggtgatggaaccgggggaattc
gccacccgcggcggcatcttcgatatcttcccctcgggcgaggccgagccggtgcggctg
gacctgttcggggacgaggtcgagaacatccgccgcttcgaccccgccacccagcgctcg
tcggaccggctggaccggttcgtcatgcgtccggtggccgatttcaccctggaccaggcc
agcatctcgcgcttccggaccggctggcgcgacctgttcgggccggcggcggcctccgat
ccgctttatgaacatgtgtcggacgggcggcgccatgccgggctggaacattggctgccg
ctgttccacgagcatctggaaacgctggtcgattacctgccgggcgtgtcgatcatcctg
gcccatcaggtcgaggacgtcctggccgcgcggctggagatgatcgccgatcatttcgag
gcccggcgccagccggtgcgcgagggcgaagtcccgtaccgcgcgctgccgccccacctg
atgtacctggaccgcaagggatgggacggaatcctgtccggccacccggtgatgctgttc
agccccttcgcccgtccggacaatgccgggggcgtggatgccggggggcggccgggcatc
ctgttcgccagcgtcgcggggggcggggcgcgtgagaacgtgttcgcgatgctggatacg
caggtccggcaatgggccgagaccgggcgccgcgcctacgtgtcggcctggacccgggga
tcgcgcgagcggatcgcgacattgctgcgcgagcacggcatgcgggtcgagacgttcgat
ggctgggcccgcgcgcaggatctgccgcccggcaccgtgggcctgctgacgctgggcctg
gaacgtggcttcatcgccgacaacctggccttcgtgtccgagcaggacctgctgggcgag
cggatttcccgcccgccgcgccggcgcaagaaggccgaccagttcattgccgaggcgtcg
gaaatcgccgagggcgacctggtggtccatcaggattacggcatcggccgctatgacggg
ctggagacgatcggcgtcggcaccgcgccgcatgactgcctgcgcctgatctatgacggg
aacgagaaactgttcctgccggtcgaaaatatcgaactgctcagccgcttcgggtccgac
caggcgggggtggcgctggacaagctgggcggggcctcgtggcagaaccgcaaggcccgg
atgaagcagcgcatccgcgacatggcgggcgaactgatccgcaccgccgccctgcgcgcg
ttgcgcgaggcccccagcatgaccccggccgaggggatgtgggacgagttctgcgcgcgc
ttccccttcgtcgagaccgaggaccagtcccgcgccatcgccgacgtgctggaggacatg
gggtcgggccgcccgatggaccggctggtgtgcggcgatgtgggcttcggcaagaccgag
gtcgcgctgcgcgcggccttcgtcgccgccctgtccggcgcccaggtggcggtggtggtg
ccgaccacgctgctggcgcgacagcatttccgcaccttctcggcccgtttctccggcctg
ccgatcacggtggcgcaattgtcgcgcatggtcacgcccaaggaggcgaccgccgtgcgc
aaggggctggccgacggcacgatcaacatcgtcatcggcacccacgcgctgctggccaag
ggcgtgcagttcgccgacctggaactgctgatcatcgacgaggagcagcatttcggcgtc
gcgcacaaggagaagctgaaggcgctgcgcgaggacgtgcatgtgctgaccctgtcggcc
accccgctgccgcgtactttgcaactggccctgaccggcgtgcgggagatgagcctgatt
gcgaccccgcccaccgaccggctggcggtgcggaccttcatcatgccgttcgacagcgtg
gtgatccgcgaggcgatccagcgcgagcggtttcgcggcgggcagatcttctgcgtcgtg
ccccggatcgaggatctggaccgcatggccgcccgcctgcaggacatcgtgcccgacgcg
cgcctggtccaggcacatggccgcctgaccccgaccgagctggaacgggtgatgaccgaa
ttcagcgacggcaaatacgacatcctgctgtccaccaacatcgtggaaagcgggctggac
atgccggcggtgaacacgctgatcatccatcgcgcggacatgttcgggctggggcagctc
tatcagttgcgcggccgcgtcgggcgcggcaagcagcggggctatgcctacctgacctgg
ccgcagacccatgtcctgtcggccgccgccgaaaagcggctggaggtcatgcagaccctg
gatacgctgggggcgggctttaccctggcgtcgcacgacctggacctgcgcggggcgggc
aacctgctgggcgacgagcaatcgggccatatccgcgaggtcgggatcgagctgtaccag
cagatgctggaggacgcggtcgcggaactgcgggtcgaaaagggccggcgcaaggcgcag
gaccgcgactggaccccgaacatcatcctgggcctgccggttctgatccccgaaacctac
gtgcccgacctgccggtccggctgggcctgtaccggcgcatcgccgggctggccaatgac
gccgaaatcgaggcgatggaggcggaactggtcgaccggttcgggacgatgccggacgag
gtgcgcaacctgctggacgtcgtcgcgatcaagcgcctgtgccgcgaggccggggtcgag
cggctggaggccgggccgaagggcatggtgatccagttccgcggtaacagtttcgccaac
ccgggtggattggtgacctggatcgcggcacataaggaaggcaatgtccgcctgcgcccg
gaccacaagctggccctggtgcgggagatgacgaacgcgcagcgcattcgcctggccaag
gacacggtccagacgctgggccgcctcgcgggtcaggagaaggcggcctga
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