Gloeocapsopsis dulcis: P0S91_21310
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Entry
P0S91_21310 CDS
T09511
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gdu
Gloeocapsopsis dulcis
Pathway
gdu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gdu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P0S91_21310 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gdu03400
]
P0S91_21310 (mfd)
Enzymes [BR:
gdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P0S91_21310 (mfd)
DNA repair and recombination proteins [BR:
gdu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P0S91_21310 (mfd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WNN88781
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All DBs
Position
4432998..4436603
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AA seq
1201 aa
AA seq
DB search
MAFFSIVRALGRSPLTTEILAKLDRQRVCRLNGIPRLPKGLVASALAQEAQSHLLVVCST
LEEAGRWTAQLEAMGWQTTHFYPTSEASPYEPFDPETEMTWGQMQVLADLVRGNGSSVTG
NGQERHFPIPNSQFPNMAIVATQAALQPHLPPLEAFQPYCLNITQGMELDLDAFGDKLVQ
LGYERVPLVETEGQWSRRGDIVDVFPVASELPVRLEWFGDEIEQIREFDPATQRSRSTNG
SALDKIDSLVLTPTTFAPIIISSLADKKQQVKTYLSPEEQEQLETNQTLEGSRRFLGLAF
DQPASLLDYLPENTLIAIDEIEQCQAHSDRWVENAEEQHAALSNIPRIHRAFEDSLATAS
NFRQLHLSELVLETEPLPLTPQRHLLQVGEAAQRSGSSSSLNLASRSVPVTPHQFGKIAE
TIRTERDRGFSVWLVSAQPSRSVSLLQEHDCPAQFIPNPRDFQAIDKLQISHTPVALKYS
GLAELEGFILPTFRLAVVTDREFFGQHTLATPSYVRKRRQAASKQVDLNKLRPGDYVVHR
NHGVGKFLKLESLMLNKETREYIVIQYADGLLRVAADQLGSLSRFRSTTTSPPELNKMTG
KAWANTKNRVRKAIKKLAVDLLKLYAARSQQQGCTYPPDQPWQEELEDSFPYQPTTDQLK
AVQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVALLAPTTILTQQHYH
TLKERFAPYPIQVGLLNRFRSAEERRDIQRRLTTGELDVVVGTHQLLGKGVNFRDLGLLV
VDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSLITTPPPTRRPIK
THLAPYDSESVRSAIRQELDRGGQVFYVVPRVDGIEETAANLREMIPGGRIAIAHGQMDE
GELESTMLTFSNGDADILVCTTIIESGLDIPRVNTILIEDAHRFGLSQLYQLRGRVGRAG
IQAHAWLFYPKQRVLSDAARQRLRAIQEFTQLGSGYQLAMRDLEIRGVGNLLGAEQSGQM
DTIGFDLYMEMLEEAIREIRGQEIPSVDDTQIDLNLTAFISTDYILDMDQKMSAYRAVAA
AKTKEELTQIAAEWSDRYGTIPSGANQLLRVMELKQIAKSLGFSRIKAEGKQHIILETPM
EEPAWNLLAANLPEHLRSRFIYSPGKVTVRGLGVLSATQQLENLIDFLSKMQGVLPEPVL
T
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atggcatttttttccattgttcgtgctttggggcgatcgccgctcacaacagaaatttta
gctaaacttgatcggcagcgcgtctgtcgtttaaacggcattcctcgccttcctaaagga
ttggtggcttcagctttggcacaagaggcacaatcgcatcttttggttgtgtgttccacc
ctcgaagaagccggacgctggacagcacagcttgaagcaatgggctggcaaacaacgcat
ttttatccaacttctgaagcttctccctacgaaccgtttgaccctgaaacagaaatgaca
tggggacaaatgcaggttttggcagatttggttagaggtaatgggtcatcggtaacaggt
aatgggcaagaacgacatttcccaattcccaattcccaattcccaaacatggcaattgtc
gcaactcaagcggcattacaaccacacttaccacccttggaggcgtttcagccatattgc
ttgaatattacccaggggatggagttagatttagatgcttttggtgacaagctagtacag
ttgggttacgaacgagtaccgctggtagaaactgaaggacaatggagtcggcgcggggat
atcgtcgatgtctttcctgtggcttcggagttaccagtacgcttagagtggttcggggat
gaaattgagcaaattcgcgagtttgaccctgcaacccagcgatcgcgcagtactaatggt
agcgctttggacaaaatcgattcactggtactcactccgacgacttttgcgccaattatc
atctcctcacttgctgacaagaagcaacaagtcaaaacctacttatcaccagaagaacaa
gaacaacttgagacaaatcaaactttagaaggtagccgtcgcttcttaggtttagccttc
gatcaacccgcgtctttacttgactacttacccgaaaacacactgattgcgattgatgaa
attgaacaatgtcaagcccatagcgatcgctgggtagaaaacgccgaggaacagcacgcc
gcactcagtaatataccacgtatccatcgcgcttttgaggactccttagcaaccgccagc
aatttccgccaactacatctatccgaacttgtcctagaaacagaacccttacccctcacc
cctcaacgccacttgctacaagtcggcgaagccgcccaacgcagtggctcctcctcatct
ctcaatttagcgagtcgttctgtaccagtgacgccgcatcaatttggcaagattgcggaa
acgattcgcactgaacgcgatcgcggtttttcggtatggttagtttcggcgcaaccttcg
cgttccgtttccctattacaagaacacgattgtcctgcacaattcattcccaatccccgc
gactttcaagcgattgataagctgcaaatatcacacacgccggtagctttaaagtattcg
ggtttagcagaacttgaaggatttattttaccaacgttccgccttgcagtcgttacagat
cgcgagtttttcggtcagcataccctggcaacaccaagttatgttcgcaagcgccgtcaa
gctgcatcgaagcaagttgatttaaataaactgcgtcctggcgattatgttgtccatcgc
aaccacggtgtcgggaagtttctcaaacttgaaagcttaatgcttaataaagaaacccgc
gaatatatcgtaattcagtatgctgatggcttgttacgagtcgccgccgatcaactcgga
tcgttatcgcgatttcgcagcacaactacgtcgcccccagaattaaacaagatgacgggg
aaagcctgggcaaatactaaaaaccgcgttcgcaaagcaattaagaaattagcagtcgat
ttgctcaaactatacgccgcgcgatcgcaacaacagggctgtacctatccccccgatcaa
ccttggcaagaagaattagaagactcatttccctatcaacctacaacggatcagctcaag
gcggtacaagacgttaaacgtgatatggaaagcgatcgcccaatggatcgacttgtctgt
ggtgatgtcggtttcgggaaaactgaagttgccatccgcgccatatttaaagctgtcact
gcgggtaaacaagttgccctccttgcccctactactatcctcacacagcagcattaccac
acgctcaaggaacgttttgcaccctacccaatccaagtaggtttactcaaccgcttccgc
agtgccgaagaacgtcgcgatattcaacgccgcctaacaaccggagaattagatgtcgtt
gtcgggacacatcagctactgggtaaaggcgtgaacttccgcgatttaggtttgctagtc
gtagacgaagaacaacgctttggcgtgaatcaaaaggagaaaatcaaatcccttaaaacg
caagtcgatgttttaactctcagtgcaactcccatcccccgcacgttgtatatgtcgctg
tcaggaattcgggagatgagtttgattacgacaccacccccaactcgtcgcccaattaag
acgcatttagccccgtatgattctgaatctgttcgtagtgcgattcgccaagaactcgat
cgcggcggacaggtgttttatgttgtcccgcgtgttgatggtattgaagaaactgcggca
aacctacgcgaaatgattccaggaggaagaattgcgatcgcccacgggcaaatggatgaa
ggcgaactggaatcgacaatgctaacttttagtaacggtgacgcagatattttggtatgt
accacaattattgaatcgggattggatattcctagagtcaacacgattttgatcgaagat
gcacaccgttttggattatcgcaactatatcagctacgcggtcgtgttggtcgtgcagga
attcaagcccatgcctggttattttaccccaagcaacgcgtcttatctgatgcggcacgg
caacgtttacgcgcgattcaagaatttacgcaactcggttcgggatatcaacttgcaatg
cgcgatctagaaattcgcggtgtgggtaatttactcggtgctgaacaatccggtcaaatg
gatacgatcggttttgatttgtatatggaaatgttagaagaggcaatacgcgaaattcgc
ggacaagaaattcccagtgttgatgatacgcaaattgacctcaacctcactgcatttatc
tccactgactatattctagatatggatcaaaagatgagtgcatatcgcgctgtcgccgca
gcaaaaacgaaagaagaattaacacaaattgcggctgagtggagcgatcgctacggtact
atcccgagtggtgcaaatcaattactgcgcgtgatggaactcaaacaaatcgccaaatct
ttaggattcagtcggattaaagctgaaggtaaacagcacattatcctcgaaaccccgatg
gaagaacccgcgtggaatctacttgcagcaaatttacctgaacacttgcgatcgcgtttt
atctattcgcctggtaaagttaccgtacgcggtttaggtgttcttagcgcgactcaacaa
ctcgaaaacctgattgatttcttaagtaaaatgcaaggcgtacttcccgaacctgtactg
acataa
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