Geobacter sp. M18: GM18_0111
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Entry
GM18_0111 CDS
T01421
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
geb
Geobacter sp. M18
Pathway
geb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
geb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GM18_0111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
geb03400
]
GM18_0111
Enzymes [BR:
geb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GM18_0111
DNA repair and recombination proteins [BR:
geb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GM18_0111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ADW11600
UniProt:
E8WKB5
LinkDB
All DBs
Position
complement(129051..131729)
Genome browser
AA seq
892 aa
AA seq
DB search
MGLEEYQRKRDLTRTPEPAGKGGRSARTLRFVIHKHAASHLHYDFRLEIDGVLKSWAIPK
GPSLDPSVKRLSMMVEDHPYEYGDFEGVIPKGNYGAGEVIIWDAGTFHAAASEERELSLK
LLREGLQKGDLKFILHGEKLNGEFALVRIRSDKGNSWLLIKKHDRYAGTEDVTLKERSVV
SNATIEDVRAGRMPGRRVFAAQSGEARAGGPAPPPHPTSPLGGEEQSGTPSPGGGKRSEA
PMPRRVSPMLATSTAEPFDDPDWLFEIKLDGYRAIAEVSGREVALYSRNNLSFNKKFPSL
PGSLASLDVEAVFDGEVVALDENGRSYFQLLQNYRRTGKGNIAYFIFDLLYLNGEDLRNQ
PLLARKERLRTLLPDLPELRYSDHIMEYGREFFELARQNNLEGILAKRAASLYQTGRRSK
DWLKIKIRMQQEAVICGFTQPRRSRKGFGALVLGVYEDDRLVCIGFAGGGFDEAGLKEMY
ELLQPLVQPEPPFGTPVKSDMPITWVKPELVCEVEFSEWTDENVMRQPIFLGLREDKDPK
SVVRELVRSAATPPQPAAEPERRAQLPGATAKEPVAAGIPASRKGGSGKKGRDEVLILDG
HRLELTNLDKVFWPDEGYTKGDVIAYYRIMAHAMLPHLVDRPESLHRTPHGITEGGFFQK
EAGELPPSWITTREIYSKHVDKHIKFFVCQDEATLVYMANLGCIEINPWLSRLQHLDYPD
YFVIDLDPEDIPFAKVIETALAVREVLDRAGAVSFPKTSGATGMHIYVPLGAKYDYDTAG
GFAKVIATLAHHKVPDFTSLLRSPRLRQKKVYLDFLQNKPGQTLAAPYSIRPRPGATVSA
PLKWEEVKPGLDPGRFTIATMPGRLEHVGDLFSGVLGPGIDLERCIENLERG
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atggggctggaagagtatcagcgcaaaagggatctgaccaggacccctgagccggccggc
aaaggggggaggagcgccaggaccctgcgcttcgtgatccacaaacacgcggcctcccac
ctgcattacgacttccgcctggagattgacggggtgctgaagagctgggcgatccccaag
ggcccctcgctcgatccctccgtgaagcggctctccatgatggttgaggaccacccctac
gagtacggcgatttcgagggtgtcataccgaaggggaactacggcgccggagaggtgatc
atctgggacgcgggcaccttccacgccgcggcctccgaggagcgggagctaagcctcaag
ctcttgcgcgaagggctgcagaagggggacctgaagtttatcctgcacggcgagaagctg
aacggggagttcgccctggtccgtatcaggagtgacaaggggaactcctggctcctgatc
aagaagcacgaccggtatgccggcaccgaggacgtgacgcttaaggagcgctccgtggtg
agtaacgccaccatcgaggacgtacgggcgggaagaatgccgggacgccgggttttcgcc
gctcagagcggggaggcccgggcgggcgggccggcgcctccaccccacccgacctccccc
ctcgggggggaggaacaatccggaaccccctcccctggagggggaaaaaggtccgaggcg
cccatgccgcgccgagtcagcccgatgctggcgacctccaccgctgaaccgttcgacgac
ccggactggctcttcgagatcaagctcgacgggtaccgcgccatagccgaggtctccggg
agagaggtcgcgctttattcccgcaacaacctctccttcaacaagaagttcccgtcactg
ccaggttcgctggcatcgctcgatgtcgaggccgttttcgacggggaggtggtggcgctg
gacgaaaacggcaggtcctatttccagctgctgcagaactaccggcgcaccggtaaaggc
aacatcgcctacttcatcttcgacctcctctacttaaacggcgaggacctgcgcaaccag
ccgcttctggcgcgcaaggagcggctgcgcaccctgctcccggacctgccggagctccgc
tacagcgaccacatcatggagtacggcagggagttcttcgaactggcgcgccagaacaac
ctggaagggatcctggccaagcgtgcggcaagcctgtaccagaccggcaggaggagcaag
gactggctcaagatcaagatcaggatgcagcaggaggcggtgatctgcggcttcacccag
ccccgccgcagccgcaaggggttcggagcgctggtgctcggggtgtacgaggacgacagg
ctggtctgcatcggttttgccggcggcggtttcgacgaggccgggctcaaggagatgtac
gagctgctgcagcccctggtgcagcccgagccgccgttcggcacgccggtaaagtccgac
atgccgatcacctgggtgaaaccggaactggtctgcgaggtggagttctccgagtggacc
gacgagaacgtgatgcgccaaccgatctttctcgggcttcgagaggacaaggacccgaaa
agcgtggtgcgggagctggtcaggtccgcggcgaccccgccgcaaccggcagcggagccg
gaaaggagagcgcaactgccgggcgctacggcaaaagagccggtggcggcgggcattccg
gcgagtcgcaagggtgggagcggtaagaaggggcgggacgaggtgctgatcctggacggg
caccggctggagctgaccaacctggacaaggtgttctggccggatgagggatacaccaag
ggggacgtgatcgcctactaccggatcatggcgcacgccatgctgccgcacctcgtggac
cggcctgagtcgctgcaccggacgccgcacgggatcacggaaggggggttctttcagaag
gaggccggcgaacttcccccctcctggatcaccacccgggagatctactcgaagcacgtg
gacaagcacatcaaattcttcgtctgccaggacgaggcgaccctggtctacatggcgaac
ctggggtgcatcgagatcaacccctggctctcccgcctgcagcatctcgactatccggac
tacttcgtcatcgacctggaccccgaggacatccccttcgccaaggtgatcgagacggca
ctcgcggtgcgcgaggtgctggaccgggccggcgccgtcagcttccccaagacctccggc
gccaccgggatgcacatctacgtgccgctgggggccaagtacgactacgacaccgccggt
gggttcgccaaggtgatagccacgcttgcgcaccacaaggtccccgatttcaccagcctt
ttgcgcagccccaggttgcggcagaagaaggtctacctcgacttcctgcagaacaagccc
ggacagacgctggccgccccctacagcatccgcccccggccgggcgccaccgtctcggct
ccgctgaaatgggaggaggtgaaaccggggctggatcccggccggttcaccatcgccacc
atgccgggacggctggagcatgtgggtgacctcttcagcggtgtcctcggaccggggatc
gacctcgagcgatgcatcgaaaatctggagcgggggtag
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