Geobacillus sp. LC300: IB49_09460
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Entry
IB49_09460 CDS
T04018
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
gel
Geobacillus sp. LC300
Pathway
gel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IB49_09460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gel03021
]
IB49_09460
03019 Messenger RNA biogenesis [BR:
gel03019
]
IB49_09460
Transcription machinery [BR:
gel03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
IB49_09460
Messenger RNA biogenesis [BR:
gel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IB49_09460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
AAA
ATPase_2
AAA_25
Spore_III_AA
DUF6417
NACHT
Motif
Other DBs
NCBI-ProteinID:
AKU26640
LinkDB
All DBs
Position
complement(1776886..1778160)
Genome browser
AA seq
424 aa
AA seq
DB search
MELTLAALENMKLKELYELAKQYKISYYSKLTKKELIFAILKARAEQDGLSFMEGVLEII
PSEGFGFLRPVGYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLHVEAV
NGEDPEIAKERVHFPALTPLYPNRQMKLETTPDKLSTRIIDLIAPVGFGQRGLIVAPPKA
GKTMLLKEIANSITTNHPDVELIVLLIDERPEEVTDIERSVQGEVVSSTFDEVPENHIRV
SELVLERAMRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFG
AARNIEEGGSLTILATALIDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAIDIRR
SGTRKEELLIPKEHLEKLWAIRKTMADSPDFIERFLNKLRRTKSNEEFFALLEQEWRNGG
PLRL
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggaattaacgttagcggctttagaaaacatgaagctcaaagagctgtatgagctcgcc
aagcaatacaaaatttcttattacagcaagttgacgaaaaaagagcttatttttgccatt
ttgaaagcgcgtgccgaacaagacggcctctcgttcatggaaggcgttctcgaaatcatt
ccgtcggaaggattcggttttttgcgtccggtcggctattccccgagctcggaagacatt
tacatttccgcttcccaaatccgccgttttgatctgcgcaatggggacaaagtatccggc
aaggtgcggccgccgaaagagaacgaacgctacttcggcttgcttcatgtcgaagcggtc
aacggcgaagaccccgaaatcgccaaggaacgcgtccactttccggcgttgacaccgctt
tatccgaaccggcaaatgaagctcgaaacgaccccggacaagctgtcgacccgcatcatc
gacttgatcgcgccggtcggcttcggccagcgcggattgatcgtcgcgccgccgaaagcc
gggaaaacgatgctgctgaaagaaatcgccaacagcattacgacgaaccatccagatgtc
gagttgatcgtcttgctcattgacgagcggccggaagaagtgaccgacattgagcggtcg
gtgcaaggagaagtcgtcagctcgacgtttgacgaggtgccggaaaaccatatccgggtg
tctgaactcgtcctagagcgggcgatgcggcttgttgaacataagcgcgatgtcgtcatt
ttgatggacagcatcacgcgcctcgcccgcgcgtacaacctggtcattccgccgagcggg
cgcacgctctcgggcgggatcgatccggcggcgtttcatcggccgaagcgctttttcggc
gcggcgcgcaacattgaagaaggcggcagcttgacgattttggcgaccgccctcatcgac
accgggtcacgcatggatgacgtcatttacgaagagttcaaggggacgggcaacatggag
ctccatctcgaccgctcgctcgccgagcgccgcattttcccggccatcgacattcgccgc
tccgggacgcgcaaagaggagctgctcatcccgaaagaacatttagaaaaactgtgggcg
attcgcaaaacgatggccgactcgccggattttatcgagcggtttttgaacaaactgcgc
cgcacaaaatcaaacgaagagtttttcgcgctgcttgagcaagaatggagaaacggcggc
ccgcttcgcctataa
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