Geminocystis sp. NIES-3709: GM3709_3394
Help
Entry
GM3709_3394 CDS
T04142
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gen
Geminocystis sp. NIES-3709
Pathway
gen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GM3709_3394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gen03400
]
GM3709_3394
Enzymes [BR:
gen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GM3709_3394
DNA repair and recombination proteins [BR:
gen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GM3709_3394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
ResIII
CarD_TRCF_RID
Motif
Other DBs
NCBI-ProteinID:
BAQ66629
UniProt:
A0A0D6AVZ5
LinkDB
All DBs
Position
complement(3801329..3804889)
Genome browser
AA seq
1186 aa
AA seq
DB search
MFNSVLRAIAKSPLTTELIQKLNISKKLNLQGIARLPKGLVTVAIAQTQQKNLLIVCATI
EEAARYMANIELMGYKQVFFYPTTEASPYEAFNGESEMIWGQMQTLSTLIKQDVTSLPLA
IVTTEKALQPHLPPPSVFADYCLNLHKAMTLETKNIELTLAKMGYDRVNLVEIEGQWSKR
GDLIDIFPVSAELPVRLEFFGDELENLREFDPVSQRSLDKIDELTLTPTTWKGIISQNLP
IVEIIKPFISTSEQENLENGIYPEGMTRFLGLAFNGENGHVASILDYFPDNSIVAIDEVE
QCQAHSRIWVEQAQEKWQLQNSLAHREKVESSTPTPNSGGENQVLNIGDLGAIPKIHRDF
STSLELIKYPQIYLSEIALEIIENEIPTINLSSRTLPVSPHQFAKLAEILRGKKEVYNTI
DLSKYNKWLISAQPSRSVALLQEHDCFAQFIPNPIDFSMIEKLHRQNTSVALKYSGQAEL
EGFILPTFRIAIITDREFFGQHNLASPTYIRKRRQAASKQVDLDKLRPKDFIVHKYHGLG
QFLELEIYEGREYLVIQYSDGLLRVPADSLELVSRYRHTGEAQPKLNKMSGREWINVKNK
VKKSIKKLAFDLVQLYAKRAELKGFSYPEDTPWQTELEDSFPYQPTPDQLKAIHDVKKDL
ENDRPMDRLVCGDVGFGKTEVAIRAIFKAVTAGNKQVVFIAPTTILSQQHYHTLVERFSP
YPINIGLLNRFRTESEKKEIVQKLATGELDIVVGTQGVLSNKIKYKDLGLLVVDEEQRFG
VNQKEKIKAMKASIDVLTLSATPIPRTLYMSISGVREMSLITTPPPSRRPIKTHILPFNQ
AVIRTAIRNELDRGGQIFYVLPRIEGMEDVIKMLQAMIPSLRIAIAHGQMHQGELETTML
AFNNGEADLLVCTTIVESGLDIPRVNTIIIEDSQKFGLAQLYQLRGRVGRSGIQAHAWLL
YPDNETLSDVARKRLRALQEFSQLGSGYHLAMRDMEIRGVGSLLGAEQSGQMEAIGFEMY
TEMLKEAINEIQGQEIPQVEDTQVDLQLNALIPTRYIPDLEQKMDAYRAIATISSEKEIR
QIESDWRDRYGDIPEPAQQLLQVAQLKLKAKSIGFSRIKLEGKQNIILETPMQEPAWQLL
NAKLPKHIQNRFVYGKNKVIVRGLGAMKASQQLDSLNSWFNYLVAE
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgttcaactctgtccttcgtgcgatcgcaaaatcacctttaactacagaattaatccag
aaactcaacattagtaaaaagctgaatttacaagggattgctcgtttaccgaaaggttta
gttaccgtagctattgctcaaactcaacaaaaaaatttactgattgtttgtgctactatt
gaagaagccgctcgttacatggcaaatattgagttaatgggctataaacaggtttttttc
tatcctaccactgaagccagtccctatgaggcttttaatggcgaatccgaaatgatttgg
ggacagatgcagactctttcaactcttattaagcaagatgttacaagtttacccttagcg
attgttaccacagaaaaagccttacaacctcatttaccgcctccatcggtgtttgcagac
tattgcttaaatttgcacaaagcgatgacgttagagactaagaatatagagctaacttta
gcaaagatgggttacgatcgagttaacctcgtggaaatcgaaggacaatggagtaaaaga
ggtgatttaatcgatatttttccagtatctgccgaattacccgtgagattagagtttttt
ggcgatgaattagagaatttacgagaatttgatcccgtatcccaacgaagtttagacaaa
attgatgaattaaccctaactcccaccacatggaaaggtataattagtcagaatttaccc
attgtagaaattattaaaccatttattagcacttctgagcaagaaaatttagaaaatggc
atttatcccgaaggtatgactcgttttttagggttagcttttaatggtgaaaatggtcat
gtcgcctcgattttagactatttccccgataattcgatcgttgctattgacgaagtagaa
caatgtcaagctcatagtcgaatttgggtagaacaagcccaagaaaaatggcaattacaa
aactccctcgcccatagggagaaggtagaatcaagcaccccaactcccaattctggagga
gaaaatcaagttcttaatattggggatttaggggctattccgaagattcatcgagatttt
tctacttctttagagttgattaaatatcctcaaatttatctatcagaaattgctttagaa
attatcgaaaatgagatacctactattaatttatcgagccgtactttacctgtttctccc
catcaatttgctaaattagcagagattttaagaggaaaaaaagaagtttataatactatt
gatttaagtaagtataataaatggttaatttctgcccaaccttctcgctctgttgcttta
ttacaagagcatgattgcttcgctcaatttatcccaaatcctattgattttagtatgatt
gaaaagctccatcgtcaaaatacttctgttgctttaaaatactcaggacaagcagagtta
gaaggttttattttacctacttttcgtattgcaattattaccgatcgagagttttttgga
caacataatttagccagtcccacttatatcagaaaacgtcgtcaagcggcatcaaaacaa
gttgatttagacaagttaagacccaaagattttattgttcataaatatcatggattagga
caatttttagagttagaaatttatgagggaagagaatatttagttattcaatatagtgat
ggtttattgagagttcccgccgatagtttagagcttgtttctcgctatagacatacagga
gaagcacaaccaaagttaaataaaatgtctggaagagaatggataaatgttaaaaataaa
gttaaaaaatccattaaaaaattagcctttgacttagtgcaattatatgcaaaaagagct
gaattaaaaggcttttcttaccctgaagatactccttggcaaacagaattagaagactct
tttccttaccaaccaacaccagatcaattaaaagcaattcacgatgttaaaaaggatttg
gaaaatgatcgccctatggatagattagtttgtggtgacgtgggttttggtaaaactgag
gtggcaattcgagcaatttttaaggcggtaacagcaggaaataaacaagtagtttttatc
gctcctaccacaattttatctcaacaacattaccatacattagtcgaaagattttcccct
tatcctattaatatcggcttattaaatcgtttccgtacagaatcagaaaaaaaagaaatt
gtccaaaaattagcaacaggagaattagatattgttgtcggcactcaaggagttttaagc
aataaaattaaatataaagatttaggtttattagtagtagatgaagagcaaagatttggg
gttaatcaaaaagaaaaaattaaagctatgaaagcatcgatcgatgttttaaccctcagt
gctacccccattccccgtactctttatatgtccatttctggggtgcgagaaatgagttta
attaccactcctcctcctagtcgtcgccccatcaaaacccatattttacccttcaatcag
gcggtgattcgtactgctattcgcaatgaattagataggggagggcaaattttctacgtt
ttacctcgtatcgaaggcatggaagacgtaataaaaatgcttcaggcaatgattcctagc
ctcagaattgccattgctcatggacaaatgcaccaaggggagttagaaactaccatgttg
gcatttaataatggtgaggcagatttgttagtatgtacgacgatcgtagagtcaggactg
gatattccgagagttaacaccataatcattgaagattcccaaaaatttggattagctcaa
ctttatcagcttagaggaagagttggacgatcgggcatacaggctcatgcttggctatta
tatcccgataatgagactttatcagacgtagctcgaaaaagactacgggcgttacaggag
ttttcgcaactcggatcaggttatcatttagctatgcgtgacatggaaattcggggagtt
ggtagcttattgggtgcagagcaatctgggcaaatggaggctatcggttttgaaatgtac
accgaaatgttaaaagaagccatcaacgaaattcaaggacaggaaattccgcaagtagaa
gacactcaagttgatttacaactcaacgctttaattcctactcgttatattcccgattta
gaacaaaaaatggatgcttatcgtgcgatcgcaactatatctagtgagaaggaaattaga
cagatagaatcagattggcgagacagatatggagatatacctgaacctgctcaacaatta
ttacaagtagctcaattgaaattaaaagcaaaatcgatcggcttttcacggataaaatta
gagggcaaacaaaatattattcttgaaacaccaatgcaagaacccgcatggcaattattg
aatgctaagttacctaaacatatacaaaatcgttttgtttatggcaaaaataaggtgatt
gtcagaggtttaggtgcaatgaaagccagtcaacagttagatagtcttaacagttggttt
aattatcttgtagcggagtaa
DBGET
integrated database retrieval system
