Geminocystis sp. NIES-3709: GM3709_52
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Entry
GM3709_52 CDS
T04142
Name
(GenBank) ATP-dependent DNA helicase UvrD/PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gen
Geminocystis sp. NIES-3709
Pathway
gen03420
Nucleotide excision repair
gen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GM3709_52
03430 Mismatch repair
GM3709_52
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gen03400
]
GM3709_52
Enzymes [BR:
gen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GM3709_52
DNA repair and recombination proteins [BR:
gen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GM3709_52
MMR (mismatch excision repair)
Other MMR factors
GM3709_52
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
DEAD
AAA_30
Viral_helicase1
AAA_12
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
BAQ63287
UniProt:
A0A0D6AKH3
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All DBs
Position
complement(83103..85427)
Genome browser
AA seq
774 aa
AA seq
DB search
MNSNLDFLHHLNLCQRQAVEHFCGPLLVVAGAGSGKTRALTYRIANLILTHKVAPENILA
VTFTNKAAREMKERIEKIFAQKIAEEKHGQRWDLLSELEQKTIQSKVYRNTIKPLWIGTF
HSLCARILRYDINKYQDDKGRVWQKNFTILDESDVQSLVKQIVTKKLNLDDKKFEPRKMR
YAISNIKNLGLTPQQYAFENPDYKGRVIAEIYEEYQNQLAGNNSLDFDDLLLIPVRIFQQ
NESVLGYWHQKFQHILVDEYQDTNQIQYELIRLLSTNNEPHKKHWNWQNRSIFVVGDADQ
SIYSFRMADFTILLNFQEDFGDNLADNFTKTMIKLEENYRSRENILQAANHLIEKNSQRI
DKVLKATRGEGETIYTYRGDNEREEASFVCRKIQQLIKENPELNWGDCAILYRINSQSRP
FEDELISKGIPYNIVGGLKFYERKEIKDALAYLRLVVNPADTVSLLRIINTPRRGIGKTT
VDNLMTASQELNIPLWEIINDQTSVNTIAGKAAKKVNQFAEIIADCQEKIQEDSASDILK
HILNISGYLDDLKQQNTDEAENREENLNELINAMLQFQEDNEDATLEGFLSNASLASDLD
NLEEGEKAVSLMTLHSAKGLEFNIVFLVGFEQGLLPHNRSLRDEMELEEERRLCYVGITR
AKEQLFITYARERYSWGNVDYCTPSQFLDELPADLLSSNLHSRQTISKKAKSEATITSAS
TDSWEEGDRVYHPIFGNGIVTNLLGLGKKNTLVVQFDSAKKIINPSHTKLEKIS
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgaattctaatctcgattttctacaccatcttaacctgtgtcaacgtcaagccgtagaa
catttttgcgggcctttattagtagttgcgggagcaggttcaggaaaaacgagagcgtta
acctatcgtatcgctaacttaattttaacccataaagtcgcaccggaaaatattttagcc
gtgacatttaccaacaaagcggctagggaaatgaaagaaagaattgagaaaatttttgct
caaaaaattgcagaagaaaaacatgggcaacgatgggatttattatcagaattagaacaa
aaaacaattcaatcaaaagtttatcgcaacacgattaaacctctgtggataggaactttt
catagtttatgtgcaagaattttacgttatgacataaataaatatcaagacgataaaggt
agagtttggcagaaaaattttactattttagatgagtctgatgttcaaagtttagttaaa
caaatcgttaccaaaaaacttaaccttgatgataaaaaatttgaacccagaaaaatgcgt
tatgccattagtaatattaaaaatttaggtcttactccacaacaatacgccttcgagaat
cctgattataaaggaagggtaattgctgaaatttatgaagaatatcaaaatcaattggct
ggaaataactctttagactttgatgatttattattaattcccgtgcgtatttttcaacaa
aatgaatctgttttaggatattggcatcaaaaatttcaacacattttagtggatgaatat
caagacactaatcaaattcagtatgagttaatcagacttttatctactaataatgaacct
cacaaaaaacattggaattggcaaaatcgatcgatatttgtggtgggagatgcggatcaa
tcaatttattctttccgaatggcagatttcactatcttattaaattttcaagaagatttt
ggggataatttagcagataattttactaaaaccatgattaaattagaagaaaattatcga
tcgagagaaaacattttacaagccgcaaatcaccttattgaaaagaatagccaaagaatt
gataaagtattaaaagccactagaggagaaggagaaactatctatacctatcgaggagat
aatgaaagagaagaagctagttttgtctgtcgaaaaattcaacaattaatcaaagaaaat
cctgaattaaactggggagattgtgctattttatatcgtattaattctcaatctcgcccc
tttgaagatgaattaattagtaagggaattccctataatattgtagggggattaaagttc
tatgaacgaaaagaaattaaagatgctttagcctatttaagattagtagttaatccagca
gatactgtcagtttacttcgtattattaacactccccgtcgaggaattggcaaaactact
gtagataatttaatgacggcttcccaagaattaaatattcctttatgggaaataattaat
gatcaaacttcagtaaatacgatcgcaggaaaagcggcgaaaaaagttaatcaatttgct
gaaataatagctgattgtcaggaaaaaatacaggaagattctgcatcagatattttaaaa
catattcttaatatttctggttatttagatgacttaaaacaacaaaatacagatgaagca
gaaaatagagaagaaaatcttaacgagttaattaatgctatgcttcaatttcaagaagat
aatgaagatgcgactttagaaggatttttgagtaatgcttctttagcttcggatttagat
aacttagaggaaggagaaaaggcagtttctttgatgacgttacactccgcaaagggatta
gagtttaatattgttttcttggtaggttttgagcagggattgttaccccataatcgtagt
ttacgagatgaaatggaactagaagaagaaagacgactgtgctatgtcggtatcacaaga
gcaaaagaacagttatttatcacctatgcacgagagagatattcttggggtaatgtggac
tattgtactccttctcaatttttggatgagttaccagcagatttgctcagtagtaattta
cattcccgtcaaactatctcgaaaaaagctaagtcagaagcgacaattacctctgcttct
acggattcatgggaagaaggcgatcgagtgtatcacccgattttcggcaatggtattgtt
actaacttattgggtttaggaaagaaaaacaccttagtggtgcagtttgattctgctaaa
aaaattatcaatcccagtcatacaaaattagaaaaaatttcctaa
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