Geomonas oryzisoli: KP004_20250
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Entry
KP004_20250 CDS
T07282
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ger
Geomonas oryzisoli
Pathway
ger03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ger00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KP004_20250 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ger03400
]
KP004_20250 (ligD)
Enzymes [BR:
ger01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KP004_20250 (ligD)
DNA repair and recombination proteins [BR:
ger03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KP004_20250 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QWV93459
LinkDB
All DBs
Position
complement(4653367..4656069)
Genome browser
AA seq
900 aa
AA seq
DB search
MGLEEYQRKRDLSRTPEPAGSGARSARALRFVVHKHAASHLHYDFRLELDGVLKSWAIPK
GPSLDPAVKRLAMMVEDHPYEYGDFEGVIPKGNYGAGEVIIWDTGTFHASGSEAPERSLE
LLREGLQKGDLKFVLHGEKLNGEFALVRIKGDKGNSWLLIKKKDPFVSSDDVTLLDRSVV
SNATIEDVRAGRMPQRVSVQARQPGAAAPAPLHPSSPLLGEEQATGAPPTPPAESATPTT
PTNSPGSTGSTGSTGSIRSTVSAGTPMLATSAAESFDDPDWLFEIKLDGYRALAEVSGSK
VSLYSRNNLSFNKKFPTVVAALASLGVDAIFDGEVVALDDSGRSYFQLLQNYQRTGRGNI
AYFVFDLLYLNGEDLRNQPLLARKERLRALLPDLADIRYSDHVMEYGREFFELARQNNLE
GILAKRAASLYQAGRRSKEWLKIKVRLQQEAVICGFTQPRRSRKGFGALVLGVYEDDRLV
CIGFAGGGFDDAGLKEMYDLLQPLVQDSSPFQQPVKSDMPVTWVRPELVCEVEFSEWTDE
NVMRQPIYLGLREDKDPKGVVRELVASAAAPPPKPAAPPPPPAPSQPAPPAKTSSGKRGR
EELMILDGHRLELSNLDKVFWPDQGYTKGDVVNYYRTMAHAMLPHLVDRPESLYRTPNGI
AEPGFFQKEAGELPPAWITTREIYSKHVDKNIKFFVCQDEATLVYMANLGCIEINPWLSR
LQNLDYPDYFVIDLDPEDIPFAKVIETALAVREVLDKAGAVSFPKTSGATGIHIYVPLGA
RYDYDAAGEFAKVIATLVHHKVPDFTSILRSPKLRQKKVYLDFLQNKPGQTLAAPYSIRP
RPGATVSAPLKWEEVKPGLDPSRFTIATMPGRLEHLGDLFAGVLGPGIDLEQCIENLERG
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgggactggaagagtatcagcgcaaacgggacctgagcaggacacccgagcccgccggg
agcggggcgaggtccgccagggccttgcgtttcgtggtccacaagcatgccgcctcccac
ctgcattacgattttcgcctggagctggacggcgtgttgaagagctgggccattcccaag
ggtccctcactcgaccctgccgtgaagcggctggccatgatggtcgaggaccatccttac
gagtatggcgacttcgagggagtgatccccaaagggaactacggcgccggtgaagtgatc
atctgggacaccggcaccttccatgcgtcgggaagcgaggccccggagcggagtctcgag
cttttgcgcgagggattgcagaaaggcgacctgaagttcgtgttgcacggtgagaagctg
aacggcgagttcgccctggtgcgcatcaagggggacaaggggaactcctggctgctgatc
aagaaaaaggacccgttcgtcagcagcgacgacgtgaccctcctggaccgttccgtggtg
agcaacgcgaccatcgaggacgtgcgggccggccggatgccgcagcgcgtgtccgtgcag
gcgcggcaaccaggtgccgccgcaccggctcccctccacccttcctcccccctcctgggg
gaggagcaagcaacaggcgcccccccaacaccgcccgcagagtccgccacccccaccacc
cccaccaactctcccgggtccaccgggtccaccgggtccaccgggtccatcaggtccaca
gtgtcagccggcacccccatgcttgccacctccgcggccgagtccttcgacgacccggac
tggcttttcgagatcaagctcgacggctaccgcgccctagccgaagtctccggcagcaaa
gtctccctctactcgcgcaacaacctctccttcaacaaaaaattccccactgttgtcgcg
gcgctggcctccctcggcgtcgacgccattttcgacggcgaggtggtggcgctcgacgac
agcgggcgctcctattttcagctgctgcagaactaccagcgcaccggccgcggcaacatc
gcctatttcgtcttcgacctgctctacctcaacggtgaagacctgcgcaaccagccgctt
ttggcccgcaaggagcggctgcgtgccctgctgccggaccttgccgacatccgctacagc
gaccacgtcatggagtacggcagggagttcttcgagctggcgcgccagaacaacctggag
gggatcctggccaaacgtgccgccagcctgtaccaggcgggaagaaggagcaaggagtgg
ctgaaaatcaaggtacgcctgcaacaggaggcggtgatctgcggcttcacccagccgcgc
cgcagcagaaaggggttcggcgccctggtgctcggcgtgtacgaggacgaccggctggtc
tgcatcgggttcgccggcgggggcttcgacgacgccgggctcaaggagatgtacgacctg
ctgcagccgctggtgcaggacagctccccgttccagcagccggtcaagtcggacatgccg
gtcacgtgggtgaggccggaactggtctgcgaggtcgaattttccgaatggaccgatgaa
aacgtgatgcgccagcccatctacctcggcctcagggaggacaaggacccgaagggcgtg
gtgcgggagctggtcgcctcggccgccgccccgccccccaagcccgctgcgccccccccg
ccccctgccccgtcccagccggcgccccccgctaaaacctccagcggaaagaggggcagg
gaagagctgatgatcctggacggccaccggctggaactttccaatctggacaaggtgttc
tggccggaccaggggtacaccaagggagacgtcgtcaactactaccggaccatggcccac
gccatgctcccccacctggtggaccgtccggagtcgctgtaccgcacccccaacggcatc
gcggagccgggctttttccagaaggaggcgggcgagctgccgcctgcctggatcacgacc
cgcgagatctactcgaagcacgtggacaagaacatcaagttcttcgtctgccaggatgag
gccaccctggtctacatggccaacctgggctgcatcgagatcaacccctggctgtcgcgg
ctgcaaaacctcgactaccccgactacttcgtcatcgacctggaccccgaggatatcccc
tttgccaaggtgatcgagacggcactggccgtgcgcgaagtcctcgacaaagcaggcgcc
gtcagctttcccaagacctccggcgcaaccggcatccacatctatgtgccgctgggcgcc
aggtacgactacgatgccgcgggcgaattcgccaaggtgatcgcgaccctggtgcaccac
aaggtcccggacttcaccagcatcctgcgcagcccgaagttgcggcagaaaaaggtctac
ctcgacttcctgcagaacaagccgggacagaccctggcggccccctacagcatacgcccc
aggcccggcgcaaccgtctccgccccgctcaagtgggaggaggtaaagccgggcctcgac
ccgagccggttcaccatcgccaccatgccgggacggctggagcacctgggcgacctgttc
gcgggggtgctgggacctggaatcgacctggagcagtgcatcgagaacctggaacgggga
tag
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