Georgenia wutianyii: FE251_10770
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Entry
FE251_10770 CDS
T06026
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gez
Georgenia wutianyii
Pathway
gez03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FE251_10770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gez03400
]
FE251_10770
Enzymes [BR:
gez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FE251_10770
DNA repair and recombination proteins [BR:
gez03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FE251_10770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QDB79803
UniProt:
A0A5B8ATF5
LinkDB
All DBs
Position
complement(2433976..2436471)
Genome browser
AA seq
831 aa
AA seq
DB search
MAKDGDPTVVQVDGHRLRLTNLDKVLYPATGTTKADVLEYYARIAPVMLPHCAGRPATRK
RWPNGVGTAEKPGEVFFHKNLGAGTPDWVERVELQHSDHTNTYPIVDEAATLAWFAQVAA
LEVHVPQWRVGSDGKRRNPDRLVLDLDPGEGAGLPECVEVALLAREILQGMGLESVPVTS
GSKGVHLYAPLRGVATSEEVSEVARELARTLETDHPDLVVSNMKKELRRGKVLVDWSQNN
RNKTTIAPYSLRGREHPMVAAPRTWEELEDPGLRHLDLHEVLERVEREGDPMAALADAAD
QAGGAPRRDRLEVYRAKRDAGRTPEPVPASVAPHDGTLAFVIQEHHASRLHWDLRLAHDG
VLVSWALPRCVPTTPRKNHLAVQTEDHPMEYLTFSGAIPKGEYGAGEMTVWDHGTYTFEK
WREGKEVIVTLTGQPDGGLAGPDGPGRTSRFALIHTGGRSEAEENHWLIHLMSAPGEDDA
QDRPVQDRPAPERPRPTRGRAAKEEGPRGAPPEFISPMLATPSDAQVLDRSAQWAVEMKW
DGVRAVVLVDHGKVRIVGRSGRDVTASYPELAGLADCLDAETAVLDGEIVALTPEGRPDF
GLLQQRIQLADQRQITRAAGQNPVRLMLFDALEVDGRSLLRRTYDERREVLEEVVDAGAH
DLVEVPPAFDGDLDAAVAASRQWRLEGVVAKRRDAAYTPGRRSRSWLKIKHSATQEAVVV
GWRPGQGAREGKVGSLLLALPHDDGLQYIGRVGSGFSEREATQWARELGREERKTAPLEV
PRPEARDARWVTPRRVAEVEFAEWTSTGRLRHPRWRGWRPDKDPADVLRES
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaggacggcgatcccacggtcgtgcaggtcgacggtcaccggctgcgtctgacc
aacctcgacaaggtcctctacccggccaccgggacgaccaaggccgacgtcctggagtac
tacgcccgcatcgccccggtcatgctgccgcactgcgcggggcgcccggccacccgcaag
cgctggccgaacggggtgggcacggccgagaagccgggggaggtgttcttccacaagaac
ctcggggcgggcacgccggactgggtggagcgggtggagctgcagcacagcgaccacacc
aacacctacccgatcgtcgacgaggcggcgacgctcgcctggttcgcgcaggtggccgcg
ctcgaggtgcacgtgccccagtggcgcgtgggcagcgacggcaagcgccgcaaccccgac
cggctcgtcctcgacctcgacccgggggagggcgccgggctgcccgagtgcgtcgaggtc
gccctcctcgcccgggagatcctccagggcatggggttggagagcgtcccggtcaccagc
gggtccaagggcgtgcacctgtacgccccgctgcgcggcgtcgcgacctccgaggaggtg
agcgaggtggcccgggagctcgcccgcaccctggagaccgaccaccccgacctcgtcgtg
tccaacatgaagaaggagctgcgccgcgggaaggtgctcgtcgactggtcgcagaacaac
cggaacaagacgacgatcgccccctactccctgcgcgggcgcgagcacccgatggtcgcc
gcgccgcgcacgtgggaggagctggaggaccccggtctgcgccacctcgacctccacgag
gtgctcgagcgtgtcgagcgcgagggagacccgatggcggcgctcgccgacgccgccgac
caggccggtggggcgccccgccgcgaccggctcgaggtctaccgcgccaagcgcgacgcg
ggccggacccccgagccggtccccgcctccgtcgccccgcacgacggcacgctcgccttc
gtcatccaggagcaccacgccagccggctccactgggacctgcgcctcgcccacgacggc
gtcctcgtcagctgggcgctgcccaggtgcgtgccgacgacgccgcgcaagaaccacctc
gccgtgcagaccgaggaccacccgatggagtacctcaccttctccggcgcgatccccaag
ggcgagtacggcgccggtgagatgacggtctgggaccacggcacctacaccttcgagaag
tggcgcgagggcaaggaggtcatcgtcaccctcaccgggcagcccgacggcggtctcgcc
ggtcccgacgggcccggccgcacgagccgcttcgccctcatccacaccggagggcgctcc
gaggcggaggagaaccactggctcatccacctcatgtcggcgcccggcgaggacgacgcg
caggaccgtcccgtgcaggaccgtcccgccccggagcggccgcgcccgacccgcggccgc
gccgcgaaggaggaggggccccggggcgctccgccggagttcatcagccccatgctcgcc
accccgagcgacgcccaggtcctggaccggtcggcgcagtgggcggtggagatgaagtgg
gacggggtgcgcgccgtcgtcctcgtcgaccacgggaaggtgcgcatcgtgggccgcagc
ggccgcgacgtcaccgcgagctaccccgagctcgccgggctggccgactgcctcgacgcg
gagaccgccgtgctcgacggggagatcgtcgccctcacccccgagggccggcccgacttc
gggctgctccagcagcgcatccagctcgccgaccagcgccagatcacccgcgccgccggg
cagaacccggtgcggctcatgctcttcgacgcgctcgaggtcgacggccgcagcctgctg
cgccgcacctacgacgagcgacgcgaggtgctcgaggaggtggtcgacgccggggcgcac
gacctcgtcgaggtcccgcccgccttcgacggcgacctcgacgccgccgtcgcggcgagc
cggcagtggcgcctcgagggcgtcgtcgcgaagcgtcgcgacgccgcctacacccctggc
cggcgcagccgctcctggctgaagatcaagcactcggccacccaggaggcggtcgtcgtc
gggtggcggcccgggcagggcgcgcgcgagggcaaggtcggctcgctcctcctcgccctc
ccgcacgacgacgggctgcagtacatcggccgcgtgggaagcgggttctccgagcgcgag
gcgacccagtgggcccgcgagctcggacgcgaggagcgcaagacggccccgctcgaggtg
ccgcggcccgaggcgcgcgacgcccgctgggtgaccccgcggcgcgtcgccgaggtcgag
ttcgccgagtggacctccaccggccggctgcgccacccccgctggcgcggctggcgcccg
gacaaggacccggccgacgtcctgcgggagtcctga
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