KEGG   Georgenia wutianyii: FE251_10770
Entry
FE251_10770       CDS       T06026                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
gez  Georgenia wutianyii
Pathway
gez03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:gez00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FE251_10770
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gez03400]
    FE251_10770
Enzymes [BR:gez01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FE251_10770
DNA repair and recombination proteins [BR:gez03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FE251_10770
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M LigD_N DNA_ligase_A_C DNA_primase_S RNA_ligase DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: QDB79803
UniProt: A0A5B8ATF5
LinkDB
Position
complement(2433976..2436471)
AA seq 831 aa
MAKDGDPTVVQVDGHRLRLTNLDKVLYPATGTTKADVLEYYARIAPVMLPHCAGRPATRK
RWPNGVGTAEKPGEVFFHKNLGAGTPDWVERVELQHSDHTNTYPIVDEAATLAWFAQVAA
LEVHVPQWRVGSDGKRRNPDRLVLDLDPGEGAGLPECVEVALLAREILQGMGLESVPVTS
GSKGVHLYAPLRGVATSEEVSEVARELARTLETDHPDLVVSNMKKELRRGKVLVDWSQNN
RNKTTIAPYSLRGREHPMVAAPRTWEELEDPGLRHLDLHEVLERVEREGDPMAALADAAD
QAGGAPRRDRLEVYRAKRDAGRTPEPVPASVAPHDGTLAFVIQEHHASRLHWDLRLAHDG
VLVSWALPRCVPTTPRKNHLAVQTEDHPMEYLTFSGAIPKGEYGAGEMTVWDHGTYTFEK
WREGKEVIVTLTGQPDGGLAGPDGPGRTSRFALIHTGGRSEAEENHWLIHLMSAPGEDDA
QDRPVQDRPAPERPRPTRGRAAKEEGPRGAPPEFISPMLATPSDAQVLDRSAQWAVEMKW
DGVRAVVLVDHGKVRIVGRSGRDVTASYPELAGLADCLDAETAVLDGEIVALTPEGRPDF
GLLQQRIQLADQRQITRAAGQNPVRLMLFDALEVDGRSLLRRTYDERREVLEEVVDAGAH
DLVEVPPAFDGDLDAAVAASRQWRLEGVVAKRRDAAYTPGRRSRSWLKIKHSATQEAVVV
GWRPGQGAREGKVGSLLLALPHDDGLQYIGRVGSGFSEREATQWARELGREERKTAPLEV
PRPEARDARWVTPRRVAEVEFAEWTSTGRLRHPRWRGWRPDKDPADVLRES
NT seq 2496 nt   +upstreamnt  +downstreamnt
atggcgaaggacggcgatcccacggtcgtgcaggtcgacggtcaccggctgcgtctgacc
aacctcgacaaggtcctctacccggccaccgggacgaccaaggccgacgtcctggagtac
tacgcccgcatcgccccggtcatgctgccgcactgcgcggggcgcccggccacccgcaag
cgctggccgaacggggtgggcacggccgagaagccgggggaggtgttcttccacaagaac
ctcggggcgggcacgccggactgggtggagcgggtggagctgcagcacagcgaccacacc
aacacctacccgatcgtcgacgaggcggcgacgctcgcctggttcgcgcaggtggccgcg
ctcgaggtgcacgtgccccagtggcgcgtgggcagcgacggcaagcgccgcaaccccgac
cggctcgtcctcgacctcgacccgggggagggcgccgggctgcccgagtgcgtcgaggtc
gccctcctcgcccgggagatcctccagggcatggggttggagagcgtcccggtcaccagc
gggtccaagggcgtgcacctgtacgccccgctgcgcggcgtcgcgacctccgaggaggtg
agcgaggtggcccgggagctcgcccgcaccctggagaccgaccaccccgacctcgtcgtg
tccaacatgaagaaggagctgcgccgcgggaaggtgctcgtcgactggtcgcagaacaac
cggaacaagacgacgatcgccccctactccctgcgcgggcgcgagcacccgatggtcgcc
gcgccgcgcacgtgggaggagctggaggaccccggtctgcgccacctcgacctccacgag
gtgctcgagcgtgtcgagcgcgagggagacccgatggcggcgctcgccgacgccgccgac
caggccggtggggcgccccgccgcgaccggctcgaggtctaccgcgccaagcgcgacgcg
ggccggacccccgagccggtccccgcctccgtcgccccgcacgacggcacgctcgccttc
gtcatccaggagcaccacgccagccggctccactgggacctgcgcctcgcccacgacggc
gtcctcgtcagctgggcgctgcccaggtgcgtgccgacgacgccgcgcaagaaccacctc
gccgtgcagaccgaggaccacccgatggagtacctcaccttctccggcgcgatccccaag
ggcgagtacggcgccggtgagatgacggtctgggaccacggcacctacaccttcgagaag
tggcgcgagggcaaggaggtcatcgtcaccctcaccgggcagcccgacggcggtctcgcc
ggtcccgacgggcccggccgcacgagccgcttcgccctcatccacaccggagggcgctcc
gaggcggaggagaaccactggctcatccacctcatgtcggcgcccggcgaggacgacgcg
caggaccgtcccgtgcaggaccgtcccgccccggagcggccgcgcccgacccgcggccgc
gccgcgaaggaggaggggccccggggcgctccgccggagttcatcagccccatgctcgcc
accccgagcgacgcccaggtcctggaccggtcggcgcagtgggcggtggagatgaagtgg
gacggggtgcgcgccgtcgtcctcgtcgaccacgggaaggtgcgcatcgtgggccgcagc
ggccgcgacgtcaccgcgagctaccccgagctcgccgggctggccgactgcctcgacgcg
gagaccgccgtgctcgacggggagatcgtcgccctcacccccgagggccggcccgacttc
gggctgctccagcagcgcatccagctcgccgaccagcgccagatcacccgcgccgccggg
cagaacccggtgcggctcatgctcttcgacgcgctcgaggtcgacggccgcagcctgctg
cgccgcacctacgacgagcgacgcgaggtgctcgaggaggtggtcgacgccggggcgcac
gacctcgtcgaggtcccgcccgccttcgacggcgacctcgacgccgccgtcgcggcgagc
cggcagtggcgcctcgagggcgtcgtcgcgaagcgtcgcgacgccgcctacacccctggc
cggcgcagccgctcctggctgaagatcaagcactcggccacccaggaggcggtcgtcgtc
gggtggcggcccgggcagggcgcgcgcgagggcaaggtcggctcgctcctcctcgccctc
ccgcacgacgacgggctgcagtacatcggccgcgtgggaagcgggttctccgagcgcgag
gcgacccagtgggcccgcgagctcggacgcgaggagcgcaagacggccccgctcgaggtg
ccgcggcccgaggcgcgcgacgcccgctgggtgaccccgcggcgcgtcgccgaggtcgag
ttcgccgagtggacctccaccggccggctgcgccacccccgctggcgcggctggcgcccg
gacaaggacccggccgacgtcctgcgggagtcctga

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