Geosporobacter ferrireducens: Gferi_20675
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Entry
Gferi_20675 CDS
T04493
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
gfe
Geosporobacter ferrireducens
Pathway
gfe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Gferi_20675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gfe03400
]
Gferi_20675
DNA repair and recombination proteins [BR:
gfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Gferi_20675
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Gferi_20675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
Kinesin
AAA_22
SWI2_SNF2
Microtub_bd
AAA_7
DUF87
Prominin
Motif
Other DBs
NCBI-ProteinID:
AOT71735
UniProt:
A0A1D8GLF4
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All DBs
Position
4404305..4406284
Genome browser
AA seq
659 aa
AA seq
DB search
MKNFQIVSDYRPTGDQPQAIERLTKGILEGKKAQALLGVTGSGKTFTMANVIEKVQKPTL
VIAHNKTLAAQLCSEFKEFFPENSVEYFVSYYDYYQPEAYVAHTDTYIEKDAQINDEIDK
LRHSATAALYERRDVIIVASVSCIYGLGDPVDYENLVLSMRTGMTKSREDILRKLVEIQY
VRNDINFIRGTFRVRGDVIEIFPAASSENAIRVELFGDEIERITEINVLTGEIIGLRNHV
SIFPASHYVTSHDKLDRAILDIEKELEERVLYFKENEKLIEAQRIQQRTMYDIEMLREVG
FCQGIENYSRHISQRPPGSKPFTLIDYFPDDFLLIIDESHVTVPQIRGMYAGDRSRKESL
VEYGFRLPSAFDNRPLNFDEFERLINQVVYVSATPGPYEKERSENIVEQIIRPTGLLDPE
IYVRPVKGQIDDLIGEVNGVIERKERVLITTLTKKMAEDLTGYLKDVGIKVRYLHSDIDT
LERMEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRA
ARHLNGRVIMYADRITDSMGRAIEETNRRRKIQEAYNQQNNIKPQGIIKKVRDVIEATKV
AEDSVKYGLDKAAEEMQLKEIQEAISRLEIEMQEAAANLQFERAAELRDKILSLKEKIG
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaactttcagattgtctccgattataggcccacgggagatcagccacaggccatt
gaacgtttgaccaaaggaatattggaaggtaaaaaggcccaagcgcttttaggcgtaact
ggctcaggaaagacttttaccatggcaaatgtaattgaaaaggtgcaaaaaccaactttg
gttattgctcacaataagacattagcagcccagctatgcagcgaattcaaggaattcttt
cctgagaattcggtagagtattttgtcagttactatgactattatcagcctgaagcttat
gtagcgcacacagatacttacattgagaaggacgcccagattaatgatgagatagataaa
ctgcgtcactcagctactgctgctttatatgagcgcagggatgtaatcattgtagccagt
gtttcctgtatttacggattaggtgatcctgttgattacgagaatcttgttttatctatg
cgtactggaatgactaaaagcagggaagatattctcagaaaattagtggagatccaatat
gttcgtaatgacattaattttattcgtggaactttcagagttcgaggtgatgtgattgaa
atttttccagccgcttcttctgaaaatgcaattcgagttgagctttttggggatgaaatt
gaacgaattacagagattaatgtgttaactggagagatcataggcctgagaaatcatgtg
tccatatttcctgcctcccattatgtgaccagccacgacaaactggatcgggcgatactt
gatatagaaaaagaattagaagagagagtgctgtactttaaggaaaatgaaaaattgatt
gaagcccaacggattcaacaaagaacgatgtatgacattgaaatgcttcgagaagtaggc
ttctgccaaggtattgagaactattcccggcacatatcgcagaggccgccagggagcaaa
cctttcacactaatcgattattttcccgatgattttctgctcattatagatgagtcccat
gtgacggttccccagattcggggtatgtatgccggggaccggtctagaaaggaatctcta
gtagaatatggttttcgtttgccatctgcctttgataacagacctttgaattttgatgaa
tttgagcgcttaatcaatcaggtagtttatgtcagtgcaacacctggaccttatgaaaaa
gaacgcagtgaaaacattgtggagcagatcattcgtccaacgggactgctagaccctgaa
atctatgtacgtcctgttaaagggcagattgatgatttaatcggagaagtcaacggggta
attgaacggaaagagcgggtactgattaccacattaactaaaaagatggctgaagactta
accggatatttaaaggatgtgggtataaaggtacgttacctccactctgatattgatacc
ttagaaaggatggaaatcatcagagatttgcggttaggcgtatttgatgtattagtgggt
attaatcttttacgggaagggttggatttgccggaggtgtctctggtcgctattttagat
gcggataaggagggtttcctgcgctcggagacttccttgattcagaccattggtcgtgct
gcccgccacctcaatggaagagtaattatgtatgcagaccggattacagactctatgggc
agagccattgaagaaaccaaccgaagaagaaaaatacaggaggcatacaatcagcaaaat
aatattaagccacagggaattattaaaaaagttcgagatgttattgaggcgacaaaggtt
gcagaggattcagtaaaatatggattagacaaggctgcagaggaaatgcagctaaaggaa
atacaggaagccatcagccggttagaaatagaaatgcaggaggcagctgccaatctacag
tttgaacgtgctgctgaattacgagataaaattttatcattaaaggaaaagatagggtag
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