Christiangramia forsetii: GFO_0300
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Entry
GFO_0300 CDS
T00448
Name
(GenBank) ATP-dependent DNA ligase family protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gfo
Christiangramia forsetii
Pathway
gfo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GFO_0300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gfo03400
]
GFO_0300
Enzymes [BR:
gfo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GFO_0300
DNA repair and recombination proteins [BR:
gfo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GFO_0300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
GH3
Motif
Other DBs
NCBI-ProteinID:
CAL65286
UniProt:
A0LY41
LinkDB
All DBs
Position
348976..351384
Genome browser
AA seq
802 aa
AA seq
DB search
MSLGDYIRKRDFRNTPEPEAKISKANKQRFVVQRHQASRLHYDLRLEIDGVLKSWAVPKG
PSMNPRDKRLAIHTEDHPIKYLEFHGTIPKGNYGAGEMKIWDSGIFESASSMDLLEQLSS
GNLKIRFSGKKLKGEFALVRTNRGEERNQWLLIKKSDNYSTDLNYDAEDLIERSDPKPGK
LIELNFKDPVKPMLATSTKEIFNDPDWIYELKWDGYRLIAHVNDGKVNLHSRNGISYNSK
FPELVKDLKTISHEAILDGEVVVVDEDGLPSFEKLQNYDTKTEGALKFYVFDMLYLNGHS
TLNLKLLERKSFIPEILEETQLAIFCDHIEGMGTAFYQKAISTGMEGVIAKKADSTYSPG
YRTEQWLKVKAEESLETLICGYTDSEGALFGSLILGIIKDGTLSYIGNCGTGFSNKTQAE
LLRKMEEREIDTNPFEKKPNLKGRKANWVRPELVCEVTFSEWTKAGRMRHPVFKGLREDK
SSGDLNNKSLPKEPKQERKSSSNSLEIDGKEVKFTNLDKIYWPESGLRKYDLIDYYLQVS
EYILPYLRDRPQNLHRHPNGIHKKGFYQKDNEGLIEDWVETTRIYSKSTNRDIEYLLCQD
EATLLYMANLGCIEINPWNSRIDHLDRPDYTVIDLDPSDKNSFDEVIEVALIAREILASA
KINAYLKTSGSSGLHIYLPINAEYSYDEARDFTKLLCYFIQEKTSGLTSMDRAVKNRKDK
IYLDYLQNRRGQTLASAYCVRPKEGAPVSAPLEWEELKKGLKITDFNIKNMLARLKEKGD
LFQAVLHDKVDMEKALERLNKL
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttggggattacatcaggaaaagagattttagaaatactccagaaccagaggct
aaaatttccaaagcgaacaagcagcgttttgtagtacagcggcatcaggcaagtagattg
cattatgatctacgtttggagatagatggagtcttaaagagctgggcggttcccaagggt
ccttcgatgaatccaagagataagaggctagctatacatacagaagatcaccctataaaa
tatttagaattccacggaactattccaaaaggtaattatggtgccggtgagatgaagatc
tgggattctggtatttttgagtctgccagttcaatggatcttttagaacaactttcgtct
ggaaatttaaaaattagattttccggtaaaaaactgaaaggagaatttgctctggttaga
acaaatcgcggggaggaaagaaatcaatggctgcttataaaaaaatcagataattactcc
acagatcttaattatgatgctgaagacctaatcgagagatcagatccaaagccgggcaaa
ctgatagaactcaattttaaagatccggtgaagcccatgctcgcaacgagcaccaaagaa
atatttaatgatccagactggatctacgaattaaaatgggatggctacaggcttatcgca
catgtcaatgatggcaaggtgaatcttcattccagaaatggaatatcttacaattctaag
tttccggaattagtaaaagatctgaaaacaatctcacatgaagcaatactggatggtgaa
gtagtggtggtagatgaagacggtctgccgagctttgaaaaattacagaactatgatact
aaaactgagggcgctttaaaattttatgtttttgatatgctttatctaaatgggcatagc
accttgaatttaaaattgctggaacgtaaaagttttattccggagattctggaagaaact
caattagctattttttgtgaccatatcgaaggcatgggaactgcattctatcaaaaagct
atcagcaccggaatggagggtgtgatagcgaaaaaagcagattcaacctattctccggga
tacaggaccgagcagtggttaaaagtaaaggcggaagaaagtcttgaaacccttatatgt
ggatatacagattctgaaggagctctttttggatcattaattcttggaattataaaggat
ggaacactttcttatataggaaattgcggaacaggtttttcgaataagactcaggcggaa
ttgctgagaaaaatggaagagcgagagatagatactaatccttttgaaaaaaaaccaaac
ttaaaaggtagaaaagcaaactgggtgagaccagaattagtttgtgaagttactttttct
gaatggacaaaagcgggaagaatgcgtcacccggtatttaaaggtttaagggaagataaa
tcatctggagatcttaataataaatcgttgccaaaggaaccaaagcaggaaagaaaatct
tcttcaaatagcttagagatagacggaaaagaggttaaatttactaatcttgataaaatt
tactggcctgaatccggacttcgaaaatatgatctaattgattactatcttcaggtttca
gaatatattctaccatatttaagagatcgacctcaaaatttacacaggcatcctaacgga
atccataaaaaaggattttatcagaaagacaatgaaggtttgatcgaggattgggttgag
accaccagaatttattctaaatctacaaacagagatatagaatatcttctttgtcaggac
gaggccaccttattatatatggcaaatctgggctgtattgagattaatccctggaattca
agaatagaccatttagatagaccagattatacagtaatagatctggatccttcagataag
aacagtttcgacgaggtgatcgaagttgcattgatcgccagggaaatacttgcttcagct
aaaattaatgcttatttaaaaacttcaggttctagtggcctgcatatatacctgcctatt
aatgctgaatattcttatgatgaagcgagagattttacaaaattgctctgttattttatt
caggagaaaacatcgggtctaactagtatggatcgggctgtgaaaaacagaaaggataag
atctatctagattatctgcaaaatcgtcggggtcaaacccttgcttcggcttattgcgta
agaccaaaagagggtgctccggtatcagcaccattggaatgggaagaactgaaaaaaggt
ctgaaaattaccgatttcaatattaaaaatatgcttgcaaggttgaaagaaaagggagat
ctatttcaggccgtgttgcatgacaaagtagatatggaaaaagctttggagcgccttaat
aaattataa
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