Geospiza fortis (medium ground-finch): 102032528
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Entry
102032528 CDS
T03755
Symbol
URB1
Name
(RefSeq) URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
KO
K14861
nucleolar pre-ribosomal-associated protein 1
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gfr03009
]
102032528 (URB1)
Ribosome biogenesis [BR:
gfr03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
102032528 (URB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Npa1
NopRA1
ELMO_ARM
Motif
Other DBs
NCBI-GeneID:
102032528
NCBI-ProteinID:
XP_005431000
LinkDB
All DBs
Position
Un
AA seq
2386 aa
AA seq
DB search
MSDCVSKFLLRDGPSSVGRGLETFVSIAKTLPSPQVYDVVEGYVKISMECAEIFRLLDGE
RKPESEMLLIFQALEAILLRTASDLSHFSVVGMNIVKKLIHSYMKLVYAALYSENHRMSR
GCLTLLSAMVAQGPDSARDVYSHFDFNNKYLPGLLKRRCKQGRPDVRMAYIQFALSFLIA
GDNAILAQVLELKDFIPAILRSEIKEDRVSTVNLLLSTLTAKVVHNKNISKTQKVRFFTA
EVLLHIASLYRWNGITDVSPEDLKVAQGSEEVGKAMVRELVHSFLMDLCCSLKHGITFYD
PSLGTSGKGGNVVLLHFLLGLKTATEDEMVADLVVNILKVCPDLLNRYFKETQYSFVPRV
KSAWMDNVKLLKKIYEAQPEISNAFKSSEFIPLPRLLSMVMVTTVPAVCSRTMFTQGLNL
PSTEVKQSILSLVSMVLRRALRNIQHCLSEETWQRSQIYTLPALQEFVQLYREAVSKVLP
DMTSIVAVWQSLLKQAREHSNGPAEKKEGDVSTVKAMTEPEVAEQHGSDDAETLLLKAAL
LQVICLYQKVVPHLVAQSNFDFSKLIKGIVTEKGLREEVPPLLQHHILKVALELPANKFA
WFKVQDISETEKISGEKSVFYLLMKMFVTSTHSHLKISTKKLIIKVLRDSGVFEYTWKEL
SVWLEHLDNAKEDQKEAVIQFLERILMLLLRNLSKTNKAADVVQEASVLQVTMFKQDSDN
ISIPVSHIDDVLDMVDVLIEGSDGFDEEIGFSLNEDMIIQTFPFSAVVPAALEARNILLL
QSGDGTGAHIVEYLVAVFTDLLHSQREPLALCLMFQLYDKDLKSLKVSKYPQLYQFNQYY
KLWIPKQSQEPVFKNHKGVSEEPTVALDSVFTTLLKSAYERGSNALLEDGVQTKLRDLAS
QLPPEQLLLGVKHVLLYLKSTVENFSSVGKTLGPQLIDLFVDILSTLLCRGNQIKLDQQQ
KQEEHQAESDLFMDEESLIADGSSSDKTLEDALTLTFRHPTLESWFLAVELRSVPQPGLN
PVTVKLLSAHLSSGVLQLLKTAAPVVQGLTADHRHVLSKYFEAITKSVLEELQAVGKGRS
QVCPRKSHQLQALEELHMYMAAAQLKEITLTMLQLPEMSLTDQKSEKSPKKGKQLNFYGQ
VLVKLLTDSYQRHPQQGEFLLSTGHIKALGILMSASASKDLEEVFLQALQSEPVLALAVG
VEVQAHCLAQCSHTSLAIVAVLIQHSRTHLLQFELWCLGSATGKYLRKHMESFLPLVNVY
LQCRDQHGFSRPAAVVLAVTPVLRKALWKELCAGIQDSGASHEASVKLQILAKLLPPVES
KGLHSLMECLPAALERAGSEESWAVADAISAVLKDSEELHSWRRQLLSACMKGLVAIYSS
SKDESRPEMERSMLLRLEELLGVVGQVDPDDWCSLVKTGLKYRYRDGTFLKVLNTAIQLL
YKEESSLSQSLVKLSKLHMMVTQHSLFLSAILRHREEDGMNSQTREALVDILLTAVQLSP
SLCESSHLPVLLGAYGATLSTTDQKILLLLQLYEKNNQSLINSRILLWGPAAVEHHKTCK
SLGKSLWQQPSMEEILCLLDREKMMRTILSFPQHRRLLPSQGIQESLYKDETVKSLDDFY
DPCFLLQLFSELTRPECVVACHKFVEVNALGLTVAALSSYDPSMRAAAYFVLASFRGHLD
GARFREQSQLLYLLDAVQNGIRQPNLRLTFSLSLYIARVAQQILKPEEHMYIKVNRFLLS
HQYLDLRKVPGFFQLFYSFDFEYKTEREWILRFLGEGLRDKHCYELYDYQRIFQVILSFF
NSPLCDEGSQRRILEILQSAAHVTRAAYELVQDHSLLTWLLHSLERRFLENKVIHKIISL
VHTLWLTNLGDKRQNKNQSWENRKLLPIQLVNEFLCVLVALIKHIRANTDLARLTELFGT
LSSVLEYRAGVVEAFRAMRRFTVNASVLSSRELLLLLHKWSLVSTDLQLQQDLQALAQKH
QHKELLKNIKDKNKLQASSPVYRHARKRSEVGEDDAAADVGVSELEKCREHLNSILAHWD
PGLPAPPCAQGGDTLIAGEAGGEAVAVTCASIHVVTKLLVRSLAGQSPLGKQDVSPVLRW
LRSRVLPHPGAVQEVLRDGTLRNGLFQLYTRLCQASSSSAGLCRQLGELSSIMLQLMEQQ
GLPSPFHGLVTSLCPSATVEEDVHKTAVSVFLTSIYIGDTWLGAREPDMFLTHARLVCSS
ADYELRGDLDTQKQGEETLMSLSRVRSQPNELLSRPRSRSCPCDGRAARGTRQQESPELG
EFNVRRRRLPALREPRRGERTERVRGSPKRAEILLLTQARAEFLDLKKKNTDTKKKKMHC
DGRAARGTRQQESIEVCVFNLRRRRFPALREPTSAEWSERLRVQPK
NT seq
7161 nt
NT seq
+upstream
nt +downstream
nt
atgtctgactgtgtctccaagttcctactcagagatggtccctcgtctgtagggagaggg
ctggagaccttcgtgtccatcgccaagacgctgccgtcaccccaagtgtacgatgtcgtg
gagggatacgtgaaaatttccatggagtgtgctgagatattcaggcttctcgatggagaa
aggaagcctgaaagtgaaatgctgttaatctttcaagctctagaagccattttactgagg
acagccagcgacctctcacatttttctgttgtgggaatgaacattgtcaaaaagttgatt
cattcctatatgaaactggtctatgctgctttgtattctgagaatcacaggatgagccgg
gggtgcctgaccctgctgtcagccatggtggctcagggcccggattctgcaagggacgtc
tacagtcattttgatttcaacaacaagtacctgcctggattgttgaaaagaagatgtaag
caggggaggccagatgtccgcatggcctatattcagtttgctctctcctttctcattgct
ggtgacaatgcaatcttggcacaggtgctggaattaaaagatttcattccagctattctt
cgctctgaaataaaggaagacagagtttctactgtcaatctcctgctttccacactgaca
gctaaggtggttcataacaaaaacatcagcaagacacagaaggttcgttttttcactgca
gaagtgttgctgcacattgcttccctgtaccgctggaatgggattactgatgtcagccct
gaggatttaaaggtggctcaaggttctgaggaggtgggcaaagcaatggtgcgagaactt
gtgcatagtttcttaatggacctgtgctgctctctgaaacatggcataaccttctatgac
ccaagtcttggcacttctggcaagggaggaaatgtggtacttctgcacttcctgcttggt
ttaaaaactgcaacagaagatgaaatggttgctgacctcgtggtgaatattctcaaagtg
tgcccagatttattgaacagatacttcaaggagacccagtattcctttgttcctagagtg
aagtctgcttggatggacaatgtgaagttactcaagaagatctatgaggctcaaccagag
atctccaatgcttttaagagttcagaatttattcctcttcccagattgctttctatggtg
atggtgacaacagtccctgcagtgtgcagtagaacaatgttcacccaagggttaaatctg
cccagcacagaggtgaagcagagcatcctctcactggtgtccatggtgctgagaagagcc
ctgaggaacattcagcactgcttgtctgaagaaacctggcagaggtcacagatctacaca
ctgccagcactgcaggagtttgtgcagctctacagagaagctgtcagcaaggttttacca
gacatgaccagcatagtggctgtctggcagtcccttctgaagcaagcgagagaacacagc
aatggcccagctgagaaaaaggaaggtgatgtctccactgtgaaggcaatgactgagcca
gaagttgctgagcagcatggttcagatgatgctgagacgctgcttctgaaagctgcactg
cttcaggtcatatgtctgtatcagaaggttgtgccccacttggtagcacagagcaacttt
gatttcagcaagctgataaagggtatagtgactgaaaagggcctgagggaggaggtccct
cctctcctgcagcatcacatcctgaaggtggctttggaacttcctgccaataaatttgcc
tggttcaaagtacaggacatctctgagacagagaagatatctggtgaaaaatcagtcttc
tatttactgatgaaaatgtttgttacaagtacccattctcatctgaaaatttccaccaaa
aagttaatcatcaaggttttacgtgacagtggagtgtttgagtacacgtggaaggagctt
tcagtttggctggaacacttggataatgcaaaagaagaccagaaggaagcagtgattcag
tttttggaaaggattttgatgctattgttgagaaacctgtcaaagaccaacaaggcagca
gacgtggttcaggaggccagcgtgctccaggtcaccatgtttaaacaggactctgacaac
atcagcatccctgtctctcacattgatgatgtcctggatatggtggatgttctgattgag
ggcagtgatggcttcgatgaagaaattgggttctctttaaatgaagacatgattatccaa
acatttcccttcagtgctgttgtccctgctgcattagaggccaggaatatactgttgctt
cagtctggagatggaacaggagcacacatcgtggagtaccttgttgctgtgttcactgac
ctcctgcactctcagagagaaccccttgctctctgcttgatgttccagctctatgacaaa
gacctcaagtccctgaaagtgtctaagtatcctcagctctaccagtttaaccagtattac
aaactctggatacccaagcaatcccaggaacctgtgtttaaaaaccacaagggggtaagt
gaagagcccactgtggcactggattctgtatttaccactttgctgaagagtgcctacgag
agaggaagcaatgccttgctggaagatggtgttcagacaaaactgagagacctggcttcc
cagctcccccctgagcagcttttgttgggagtaaagcacgtgctgctgtacctgaaatcc
acggtggagaacttcagcagtgttggtaaaactttgggtcctcagctcattgacctcttt
gtggacattctgagcaccttgttgtgccggggcaatcagataaagctggaccagcagcag
aagcaggaggagcaccaggctgagtcggatctcttcatggatgaggagtctctgatagca
gacgggtcttcaagtgacaagaccctggaggatgcactcaccctgactttcagacatcct
acgctggagagctggttcctggccgtggagctgcgctctgttcctcagcctggtttgaac
cctgtcactgtgaagctcttgtcagctcacctcagttctggggtgctccagctgctgaaa
acagctgcccccgtcgtgcagggcctcacagcagatcacagacatgtcttgtccaagtat
ttcgaagccatcacaaaaagtgtcctggaagagctgcaggctgtgggcaagggcagaagc
caggtctgtcccaggaagtcccaccagctgcaggctctggaggagctgcacatgtacatg
gctgcagctcagctgaaggagatcactctcaccatgctgcagcttcctgagatgagcttg
actgatcagaaatctgaaaaatcccctaaaaaggggaagcagttaaacttctatggacaa
gttttggtgaagctccttacagacagctaccaaaggcatccccagcaaggagaatttctg
ctctccacagggcacattaaagctttggggatattgatgtcggcatcggccagcaaagat
ttggaggaggttttcctccaggctctccagagcgagccagtccttgccctcgcagtcggt
gtcgaggtccaggctcactgccttgcccagtgctcacacacctccctggccatcgtggcc
gtgctgatccagcactccaggactcacctgctgcagtttgagctctggtgtctgggcagt
gccactgggaagtacctcaggaagcacatggagagctttctgcccctcgttaatgtgtac
ttgcagtgcagagaccagcatggcttcagccgacctgccgcagttgtcctggctgtcacc
cctgtcctgaggaaagccctgtggaaggagctctgtgctgggattcaggactccggagca
tcacacgaggcctctgtcaaactgcaaatccttgcaaagctgttgccacctgtggaaagc
aaagggctgcacagcctaatggagtgccttcctgctgctctggagagagcagggagtgag
gagagctgggccgtggcagatgccatttccgcagtgcttaaagactcggaggagctgcat
tcctggaggagacagctcttgtcagcctgcatgaaggggttggttgccatctacagcagc
agtaaagatgaaagcaggccagaaatggagaggtccatgctgctgaggctcgaggaatta
ttgggtgtggttggacaagtggacccagatgactggtgcagccttgtgaagacaggactc
aagtaccgttacagggatggaacattcctgaaggtcctgaacactgccatccagttactg
tacaaggaagaatcctcactcagtcagagcttggtcaagctctccaaactccacatgatg
gtcacacagcactctctctttctgtcagccatcctgaggcacagagaagaagatggcatg
aacagccagacaagagaggcgctggtggacatcctgctgacagctgtgcagctcagcccc
tctctgtgtgagagcagccacctccccgtgctgctgggagcctacggggccacgctgagc
accacagatcagaagatactgctgttgcttcagctgtatgagaagaataatcaaagtctt
ataaactccaggatcctgctctggggtccagctgctgtggagcatcacaagacgtgcaag
agtctggggaagtccctgtggcagcagccaagcatggaggagattctgtgtctgctggat
cgagagaagatgatgaggacgatcctgtcgttccctcagcaccgccggctgctgccatca
caggggatacaagagtcgctatataaagatgaaacagtgaagagccttgatgacttctat
gatccttgttttctacttcagctcttcagtgaactgaccagaccagagtgtgtggtggcc
tgtcacaagtttgtggaagtcaatgccctgggtctcaccgtggctgccctgagcagctac
gaccccagcatgagagcggcggcgtattttgtgctggcctccttccgcggccacctggac
ggggcccgctttcgggagcagagccagttgctgtatctcttggatgctgtgcagaacgga
atcaggcagcccaacctcaggctcaccttctccctgagcctctacattgcccgtgtggca
cagcagatcctgaagccagaggagcacatgtacataaaggtaaacagattccttctgtca
caccagtacttggacctgaggaaggtaccaggctttttccagcttttctacagtttcgat
tttgagtacaaaacagagcgggagtggatcctcagattccttggggaagggctgcgtgac
aaacactgctatgagctttatgactaccagaggattttccaggtcattctgtccttcttc
aacagtcctttgtgtgacgagggctcccagcgtcggattctggagatattgcagagtgct
gcccatgtcaccagagctgcctatgagctggtgcaggatcacagcctgctcacctggctc
ctgcacagcttggagagaaggtttctggagaacaaggtgatacataaaattatttcctta
gtccacacactgtggctaacaaatttaggagacaagagacaaaacaagaatcaatcctgg
gagaacaggaaacttcttcctattcagcttgtaaatgaatttctgtgtgttttggtcgca
ttaatcaaacatattcgggctaacacagacctggccaggctgactgagctgtttggcacc
ctgagctctgtgctggaataccgtgctggggttgtggaggctttcagggccatgaggcga
ttcacggtcaacgccagcgtcctctcctccagggagctgctgctgctgctgcacaagtgg
agccttgtcagcacagacctgcagctgcagcaggacctgcaggccctggcccagaagcac
caacacaaagaattgctcaaaaatatcaaggacaagaacaaacttcaagcctcatctcct
gtgtatcggcacgctcggaaaaggagcgaggtgggagaagatgacgctgctgcagacgtg
ggagtgtccgagctggagaaatgcagagagcatctgaattccatcctggcccattgggac
cctggtttgccagcaccaccctgcgcacagggaggggacaccctcatagccggtgaggcc
gggggtgaggcagtggctgtcacctgtgcctccattcacgttgtcaccaagctgctggtg
aggtccctggctgggcagagccccctcgggaagcaggacgtgtccccagtgctgaggtgg
ctgcggagccgtgtcctgccacacccaggggccgtgcaggaggtgctcagggatgggaca
ctgaggaacggcctcttccagctctacacccggctctgccaggccagcagctcctcagcc
gggctctgcaggcagctcggggagctcagctccatcatgctccagctcatggagcagcag
ggcctgcccagccccttccacggccttgtgacatctctgtgcccatcagcaacggtggaa
gaggatgtgcacaagacagctgtttctgtgttcctgacttccatttacattggggacacg
tggctgggagcacgggagccggatatgttcctcacccatgccagactggtctgctctagt
gcagattatgaattacggggtgacctggacactcagaaacaaggggaagaaactcttatg
tctctttcgcgagtgcggtcacagcctaatgagctcctgtcccgcccgcgctcccggtcg
tgtccgtgcgatggccgcgccgcccgcgggacgcggcagcaggaaagccccgagctgggc
gagtttaacgtgaggcggcgccgcttgcccgccctcagggagccgcgccgcggagaacgc
accgagcgggtccgagggtctccgaagcgagccgagatactgctgctcacccaagctcgt
gctgagttcctggacttgaagaaaaagaacacggacacaaagaagaagaagatgcactgc
gacggccgggccgcccgcgggacgcggcagcaggagagcatcgaggtttgtgtgtttaac
ctgaggcggcgccgctttcccgccctcagggagccgacctcagccgaatggagcgagcgg
ctccgagttcagccgaaatga
DBGET
integrated database retrieval system
