Geospiza fortis (medium ground-finch): 102038309 Help Entry 102038309         CDS       T03755                                  Symbol COL3A1 Name (RefSeq) collagen type III alpha 1 chain   KO K19720   collagen type III alpha Organism gfr  Geospiza fortis (medium ground-finch) Pathway gfr04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:gfr00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     102038309 (COL3A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:gfr00536]     102038309 (COL3A1) Glycosaminoglycan binding proteins [BR:gfr00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    102038309 (COL3A1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC Motif Other DBs NCBI-GeneID:  102038309 NCBI-ProteinID:  XP_005416043 LinkDB All DBs Position Un AA seq 1459 aa AA seqDB search MMSSVQKVTLLILAVFQPSVILAQQVALGGCTHLGQAYADRDVWKPEPCQICVCDSGSVL CDDIICDDQELDCPNPEIPFGECCPVCPQTTTPPPRVIVSRGPKGDPGSPGVPGRNGPPG PPGQPGSPGAPGPPGICQSCPSISGGSFSPQYDSYDVKAGGAGIGYPQPISGFPGPPGPS GPPGPPGHAGPPGSAGYQGSPGEPGQPGPPGPPGPVGMIGPVGPPGKDGEPGRPGRNGDR GIPGLPGHKGHPGMPGMPGMKGQRGFDGKDGAKGDSGAPGPKGETGLPGVNGAPGQPGPR GPAGERGRPGNPGGPGAHGKDGSPGAAGPPGPPGPPGTAGFPGSPGFKGEAGPPGPAGVS GSPGERGEPGPQGNAGPPGPQGPPGRAGSPGNKGEMGPSGIPGAPGLPGGRGLPGPPGAS GNPGAKGSPGDPGKDGAKGDPGPKGERGENGTPGAPGPPGEEGKRGANGEPGQNGVPGTP GERGSPGFRGLPGSNGLPGEKGPAGERGSPGPPGPSGPAGERGQDGGPGLPGMRGLPGIP GSPGSDGKPGPPGSQGESGRSGPPGPPGPRGQPGVMGFPGPKGNEGAPGKNGERGPGGPP GPPGLAGKNGDVGLPGPPGPSGASGERGEPGPAGPPGLQGLPGGPGPAGENGKPGEPGPK GDIGGPGFPGPKGENGIPGERGAQGPPGPPGTRGGPGPAGTEGAKGPPGPPGPPGGTGLP GLQGMPGERGASGSPGPKGERGEPGGKGADGLPGARGERGNVGPIGPPGPAGPPGDKGET GPAGAPGPVGSRGGPGERGEQGLPGPAGFPGAPGQNGEPGGKGERGPPGLRGEAGPPGAA GPQGGPGAPGPPGPQGIKGDRGSPGGPGAAGFPGARGLPGPPGNNGSPGPPGNAGPAGKD GPPGPPGSSGAPGGPGPAGIRGEPGAPGEKGPPGARGERGAPGEPGPQGIVGGRGNTGLP GLRGPSGPPGMAGAKGEDGKPGTNGIPGERGAPGPQGPIGQRGLPGEPGRDGNPGSDGLP GRDGSPGGKGDRGDNGSPGPPGPPGHPGPAGNAGAPGKSGERGFQGPPGPPGSTGPAGAR GPAGPQGPRGDKGEPGERGSTGIKGHRGFPGTPGLPGPPGPLGPQGAIGGPGASGARGPP GPAGPPGKDGTSGYPGPIGPPGPRGTRGESGPAGPPGQPGLPGPAGPPGPCCGGGAAALG AGEKGPVSYGYEYRDEPKENDINLGDIISSMKSINNQIENIISPDGSRKNPARNCRDLKF CHPELKSGEYWVDPNQGCKMDAIKVYCNMETGETCLNANPRTVPRKNWWTSGNSGKKHVW FGESMNGGFQFSYGDPELPEDVSEVQLAFLRILSSRASQNITYYCKNSIAYMDHDSGNVK KALKLMSSTESEIKAEGNSKFTYAVLEDGCTKHTGEWGKTVFEYRTRKTMRLPVVDIAPL DIGGPDQEFGVDIGPVCFL NT seq 4380 nt NT seq  +upstreamnt  +downstreamnt atgatgagctctgtgcaaaaagtaactttgctcattcttgccgtgtttcaaccctcagtt attttggcacaacaagtcgccctaggaggatgtacccatcttggacaggcttatgctgac agggacgtttggaaaccagagccatgccaaatctgcgtgtgcgactcgggatctgttctc tgcgatgacatcatctgtgacgatcaggagctggactgccctaacccagagatccctttt ggagagtgctgtccagtttgtccacaaacaacaacgccacctccaagagtaatagtcagc cgaggccccaagggagaccctggttctcctggagttccaggcagaaatggtccccctggc ccaccaggacagccagggagccctggagctcctgggcccccaggaatctgccagtcatgt cccagtataagtggaggtagtttttctccacagtatgactcctatgatgtgaaggctggt ggagctggtatcgggtacccacaacccattagtggctttccaggaccccctggccccagt ggcccccctggcccacctggacatgcaggtcctcctggctctgctggataccagggctcc cctggagaaccaggacaacctggccctcccggacctccaggccctgttggaatgataggc ccagttggtccaccaggaaaagatggagaaccaggaagaccaggcaggaatggagatcgt ggaatccctggattaccgggtcacaaaggacaccctggaatgcctgggatgcctgggatg aaaggccaacgaggttttgatggaaaagatggtgccaaaggtgacagtggtgctcctggt ccaaagggtgaaactggtcttcctggagtaaatggagcaccaggccaaccgggaccaaga ggtccagctggagagagaggaagacctgggaatcctggtggccctggtgcccatggcaaa gatggatctccaggagcagcaggcccacctggtcccccaggtccccctggaaccgcagga tttccaggctctccaggttttaagggtgaagctggtcctcctggtcctgctggtgttagt ggtagtcctggagagaggggagaacctggtcctcagggaaatgctgggccacctgggcct cagggccctcctggaagagctggaagccctggcaacaagggtgaaatgggaccttctggt attcctggtgctcctggtctgccaggaggccgtggtctgccaggtcctccaggtgcaagt ggaaaccctggggcaaaaggcagtccgggagaccctggtaaggatggtgcaaaaggagat ccaggcccaaaaggcgagcgtggtgaaaacggcaccccaggtgctcctgggcctcctggt gaggaagggaagagaggtgcaaatggagaacccgggcagaacggagtacctggtacccct ggagaaaggggctcccctggcttccgtggcttacccggtagcaatggacttccaggcgaa aagggtcctgcaggtgagcgtggcagcccaggcccccctggccccagcggacctgcagga gagcgtggacaagacggaggcccagggcttcctggaatgagaggcttgcccggaattcca ggaagccctggaagcgatgggaaacctggccctcctggcagtcagggtgaatctggacgc tctggcccacctggccctccaggtccccgtggccagccaggtgtgatgggtttccctggc cctaagggcaatgagggtgcaccaggcaagaatggagaaagaggccctggtggaccacct ggaccacctggtcttgctgggaagaatggtgatgttggccttccaggtcctccaggacct agtggtgcttctggagagagaggagaaccaggaccagcaggcccacctggccttcaggga ttgcctggtggaccaggaccagctggagagaatggaaagcctggagaaccagggccaaaa ggtgatattggaggacctggattcccaggccctaagggtgaaaatggtatcccaggagaa cgtggtgcacaaggtcctccaggacctcctggaacaagaggtggaccaggtcctgctggc acagaaggtgccaagggtcctcctggcccaccaggtccccctggaggcacaggactgcct ggcttacagggaatgccaggagaaagaggagcttctggaagccctggaccaaaaggggag aggggagaacctggtggtaaaggtgctgacggccttcctggtgcaagaggagagagaggc aatgtaggtcccattggccctcctggtcctgccggcccacctggagataagggagagact ggcccagcaggtgcccctggcccagtgggttcccgtggaggtcctggtgaacgaggagaa caaggtctccctgggcctgctggcttccctggagccccaggccaaaatggggaacctggt gggaaaggagaaagaggcccccctggtctgagaggagaggctggaccccctggagcagct ggtccacagggtggccctggtgccccaggtccacctggtccccaaggaataaaaggagac cgtggatctcctggtgggcctggtgctgctggtttccctggtgctcgtggtctacctggt ccccctggtaacaatggtagtccaggtccccctggtaatgcagggcctgcaggcaaggat gggcctcctggaccccccggtagttctggtgctcctggaggtccaggacctgctggaatc agaggtgagcccggcgcaccaggagaaaaagggcccccaggagcccgaggagaaaggggg gctccaggtgagccaggtcctcaaggcatcgttggcggccgggggaacacgggtctgccg ggcctgcgtggccccagcggcccacccgggatggcaggggccaagggtgaagacggtaaa ccaggcaccaacggtatcccaggagaacgcggtgctcctggtccccaaggtcctattgga caaagaggcttacccggagagcctggcagagatggtaaccctggctctgatggcttgcct ggacgtgacggatccccaggaggcaaaggtgaccgtggtgacaatggctctcctggccct ccaggaccccctggccaccctggacctgcaggtaatgctggtgcacctggaaaatctggt gaaagaggatttcagggtccacctggccctcctggctctactggtcctgctggtgctcgt ggtcccgctggtcctcaaggtcctcgtggtgataagggtgaacctggtgaacgaggcagc actggcataaagggtcacagagggtttcctggtacccccggtctccctggtcctcctggt cccctgggtccacaaggtgctattggaggtccaggagcttcaggtgcaaggggtccccca ggcccagctgggccacctggaaaagatggtaccagtggctatccaggtccaattggtcct cccggcccccgcggtaccagaggcgaaagtggccctgccggtccaccagggcagcctggt cttcctggtcctgctggacctcctggcccatgttgtggtggtggtgcagctgccctgggt gctggtgagaaaggtccagtttcctatgggtatgaataccgagatgagcccaaggagaat gatatcaatctgggtgacatcatctcttcaatgaaatccattaacaaccagattgaaaac atcattagtcctgatgggtcacggaagaatccagctcgcaactgccgagacctgaagttc tgccatcctgagctcaagagtggagagtactgggttgatcctaaccaaggctgcaagatg gatgctattaaagtctactgcaatatggaaactggtgagacctgcctcaatgctaacccc aggactgtgccaaggaaaaactggtggaccagtggaaacagtggaaagaaacacgtttgg tttggagagtctatgaatggaggcttccagttcagctacggagatcctgagctcccagag gatgtctccgaagttcagctggccttcctgcgcatcctctccagtcgtgcctcccagaac atcacctactactgcaagaacagcattgcctacatggaccacgacagtgggaatgttaaa aaagctctgaaactcatgagctctacagaaagtgagatcaaggctgaaggaaacagcaaa ttcacatacgctgttctggaagatggctgcactaaacacactggtgagtggggtaaaaca gttttcgaatacaggacgcgcaagaccatgaggttgccggtggttgacattgcaccatta gatattggtggtcctgatcaggaatttggcgtggacattggcccagtctgcttcttataa

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