Gallus gallus (chicken): 420119
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Entry
420119 CDS
T01006
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
gga
Gallus gallus (chicken)
Pathway
gga03013
Nucleocytoplasmic transport
gga03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
420119 (UPF1)
03015 mRNA surveillance pathway
420119 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gga03019
]
420119 (UPF1)
Enzymes [BR:
gga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
420119 (UPF1)
5.6.2.5 RNA 5'-3' helicase
420119 (UPF1)
Messenger RNA biogenesis [BR:
gga03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
420119 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
420119 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
420119
NCBI-ProteinID:
XP_015155614
CGNC:
2340
Ensembl:
ENSGALG00000003220
UniProt:
A0A8V1AHU8
LinkDB
All DBs
Position
28:complement(3847285..3866737)
Genome browser
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQAQG
APGAGQGPAGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaagcgtacggccccagctcgcagaccctcaccttcctggacacggaggag
gccgagctgctcggcgcggacacgcagggctccgagttcgagttcaccgacttcaccctt
cccagccagacccaaaccccgcccgggcccgggcaggcggggcccggccaggcccaaggc
gctccgggagcggggcagggccctgcaggccccatcgaggcccaggttaatggaccggat
ggcattctgcagaatggagcagtggatgataacgtagctaaaaccagccagcttctggca
gagttgaattttgaagaagatgaagaagatacttactatacaaaggatcttcctgtgcat
gcttgcagttactgtggtatccatgaccctgcctgtgtggtgtactgcaacaccagcaaa
aagtggttctgtaatgggcgtggaaatacatctggcagccacattgtcaatcatcttgtg
agagcaaagtgcaaagaggtgactctccataaagatggacctctaggagagactgtcctg
gaatgttacaactgtggatgtcgtaacgtgtttctccttggctttattccagctaaggca
gactctgtggttgttttgctgtgcaggcagccatgtgcaagtcagagcagtttaaaggat
attaattgggacagttcacagtggcagcctcttatccaagatcgctgtttcctttcgtgg
ctggtaaagattccatctgagcaggaacagctgagagcacgtcagattacagctcagcag
attaacaaactggaagaactttggaaggaaaatccatctgcaacccttgaggacttagaa
aagcctggtgttgatgaagaaccacagcatgtcctgcttagatacgaagatgcttatcag
taccaaaatatatttggtcctctagtcaagctcgaggcagactatgacaagaagcttaag
gagtctcagacccaagataacatcacagtcagatgggacctgggcttgaacaagaaaaga
attgcttatttcactctgccaaagactgattcagatatgcgtcttatgcaaggagatgag
atctgcttgaggtataaaggagacctggcacctttgtggaaaggaattggccatgttatc
aaagttcctgatagttctacagattatggtgatgagatagccatcgagctgaggagcagc
gttggagcccctgtggaggttactcataacttccaagtggattttgtgtggaagtctact
tcatttgacagaatgcagagtgctttaaaaacatttgctgtggatgagacttcagtgtca
ggatacatctatcacaaactgttaggccatgaggtggaagatgtaattattaaatgccag
ttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtttatgct
gtgaagactgtcctgcagcgtcctctgagccttatccagggtccccctggtactggaaaa
acagtgacatcagctaccattgtctatcatctggctagacagggcaatgggcctgtgtta
gtgtgtgctccgagtaacatagctgtagatcagttgacagagaagatccaccagactggt
ctgaaagtggttcggctgtgtgctaaaagccgtgaggcaattgactcacctgtatccttc
ttggctctgcataaccagatcagaaacatggatagcatgccagagcttcagaagctgcaa
caacttaaagatgaaactggagaactgtcatctgctgatgagaaacgctaccgtgcacta
aaacgaacagcagagcgtgagctgcttatgaatgcagatgtgatctgttgcacatgtgtg
ggagctggggatccaagacttgcaaaaatgcagttccgctccattctgattgatgaaagc
acgcaggccactgagccagagtgcatggtgccagttgtgctgggagcaaagcagcttatt
cttgtaggtgaccactgccagcttggtcccgttgtgatgtgtaagaaagctgcaaaggca
ggcttgtctcagtccctgtttgagaggctggtggtgctggggattcgccccatccgcctg
caggtgcagtaccgtatgcaccctgctctgagtgctttcccatccaacatcttctatgag
ggttcgctccagaatggtgtcactgcagctgaccgtgtgaagaaagggtttgatttccag
tggccacagccagataagccaatgtttttctatgttacacaaggacaggaagaaatcgcc
agctcaggcacctcttacttgaacagaacggaagctgccaatgtggagaagataactaca
aagctattgaaagctggtgccaaacctgatcagattggcattattactccttatgaaggc
cagcgatcctatctggtgcagtacatgcagttcagtggttccttgcatacaaaactttac
caggaagtagaaattgcaagcgtggatgccttccaaggacgagagaaggactttattatc
ctgtcttgtgtgagggccaacgaacaccaagggataggatttctgaatgaccccaggcgt
cttaatgtggctcttacaagagcaaggtatggggtgattattgttgggaacccaaaagct
ctgtctaaacaaccactttggaatcacctgctgaattactacaaggagcagaaggttctg
gtggagggaccactgaataacctccgggagagcctcatgcaattcagcaagccccgaaaa
cttgtcaacactatcaacccaggtgcccgcttcatgaccactgccatgtatgatgcacgt
gaggctattattccaggatctgtctatgaccggagcagtcaagggcgcccatccaacatg
tacttccaaacccacgaccagatcgggatgatcagtgcaggccccagccacgtcactgct
atgaacattcctatccccttcaacctcgtgatgcccccaatgccacctccagggtacttc
gggcaggccaacggcccggctgcagggcgtggggcacccaaagggaagactggtcgtggt
gggcgccagaaaaatcgttttgggattcctggaacgagtcagtcaaaccttcccaatagc
caggcgagccaagacgtggtgtcccagcctttctcccagggtccactgactcaggggtat
atctccatgagtcagccatctcagatgagtcagcctgggctctcccaaccagaattatca
caggacagttaccttggtgatgagtttaagtctcagattgacgtggcgctgtcacaggac
tccacctaccagggggaacgcgcgtatcaacatggcggagtgacgggactgtcacagtat
tag
DBGET
integrated database retrieval system
