Gavialis gangeticus (Gharial): 109294723
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Entry
109294723 CDS
T07453
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03013
Nucleocytoplasmic transport
ggn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109294723 (UPF1)
03015 mRNA surveillance pathway
109294723 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggn03019
]
109294723 (UPF1)
Enzymes [BR:
ggn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109294723 (UPF1)
5.6.2.5 RNA 5'-3' helicase
109294723 (UPF1)
Messenger RNA biogenesis [BR:
ggn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109294723 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
109294723 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
109294723
NCBI-ProteinID:
XP_019368720
LinkDB
All DBs
Position
Unknown
AA seq
1117 aa
AA seq
DB search
MVNFTWLQSPSKAYLKTPPAFPLLGADTQGSEFEFTDFTLPSQTQTPPGPGQPGPGQGPG
AAGAGQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFD
RMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKT
VLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV
VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRT
AERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVG
DHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSL
QNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLL
KAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSC
VRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEG
PLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQ
THDQIGMISAGPSHVPAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQ
KNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDS
YLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atggttaacttcacctggctacagtctccatcaaaagcctacctgaaaacacccccagca
tttccactgctcggcgccgacactcagggctccgagttcgagttcaccgacttcacgctc
cccagccagacgcagactccgcccgggccggggcagccggggccggggcagggcccgggc
gcggccggtgcgggtcagggcccaccggggcccatcgaggcgcaggttaatggacctgat
ggcatcctacagaatggtgctgtggatgataatgtggctaaaaccagccaacttctggcg
gagttgaactttgaagaagatgaagaggacacctactataccaaggatctgcctgtgcat
gcttgcagttactgtggcattcatgacccagcctgtgtggtttactgcaacaccagcaaa
aagtggttctgcaacgggcgtggcaatacgtccggcagccacatcgtaaaccacctggtg
agagccaaatgcaaagaggtaactctccacaaagatgggcctcttggagagactgtcttg
gagtgttacaattgtggatgccgaaacgtgttcctccttggcttcattcctgcaaaggct
gactcagtagtagtcttgctgtgcaggcaaccatgtgccagtcagagcagtttaaaggat
attaattgggacagttcacagtggcagcctcttatccaagaccgctgcttcctttcctgg
ctggtaaagattccctctgaacaagagcagctgcgagcccgtcagattacagctcagcaa
attaacaaactggaggaactctggaaggaaaacccatctgcaacccttgaagacttggaa
aaacctggtgttgatgaagaaccgcagcatgtcttacttcgatatgaggatgcttatcag
taccaaaatatctttggacctttagttaagcttgaggcagactatgacaagaaactcaag
gaatcccagacccaggataacatcacagtgagatgggacctaggcttaaacaagaagaga
attgcttacttcactttgccaaagactgactcagatatgcgtcttatgcaaggagatgag
atctgcctgaggtataaaggagacctggctcctctgtggaaaggaattggtcatgttatc
aaagtgccggataattatggtgatgagatagccattgagctgagaagcagtgttggagca
cctgtggaggttactcataacttccaggtggattttgtttggaagtctacttcatttgac
agaatgcaaagtgctttaaaaacatttgcagtggatgaaacttctgtgtctggctacatc
taccacaagctgttaggtcatgaggtagaagatgtgattattaaatgccagctgccaaag
cgttttacagcgcaaggactgcctgacctcaaccattctcaggtttatgctgtgaagacc
gtcttgcagcgtcctctgagccttattcaaggtccccctggcacaggaaaaacagtgaca
tcagcaacaattgtctaccatctagctaggcagggcaatgggcctgtgttagtttgtgcc
ccaagtaacatagctgtggatcagctgaccgagaagattcatcagacgggactgaaagtg
gttcgcctgtgtgctaaaagtcgtgaggcaatcgattctcctgtatctttcttggcattg
cacaaccagattagaaacatggacagtatgcctgagcttcagaaactgcagcagctgaaa
gatgaaactggagaattgtcatctgctgatgagaagcgttatcgtgcactgaagcgaaca
gcagagcgtgaattacttatgaatgcagatgttatctgctgcacgtgtgtgggagcaggt
gacccgagacttgcgaaaatgcagttccgctccattttaattgatgaaagcacgcaggct
actgaaccggagtgtatggtgccagtggttcttggagcaaagcagctgatcctcgtcggt
gaccactgccagctgggtcctgttgtgatgtgtaagaaagctgcaaaggcaggcctgtct
cagtctctctttgagaggcttgtggtgttggggatccgtccaatccgcctgcaagtgcag
tatcggatgcatcctgcacttagtgcatttccatccaacatcttctatgagggctctctc
cagaacggcgtcactgcagcggaccgtgtgaaaaagggatttgatttccagtggccccag
ccagataagccgatgttcttctatgtgacccaggggcaggaagaaattgccagttcaggc
acctcttacttgaacaggacggaagctgctaatgtggagaagataactacaaagctgttg
aaagctggtgccaaaccagatcagattggcatcattaccccctacgagggtcagcgatct
tacctggtgcagtacatgcagttcagcgggtccttgcatacaaagctctaccaggaagtg
gaaatcgcaagtgttgatgctttccagggacgggagaaagattttattatcctttcttgc
gtaagagccaatgagcaccaaggaattggatttttaaatgatcccagacgtcttaatgtg
gctcttaccagagcaagatatggagtcattattgttgggaacccaaaggctctgtctaag
cagcctctttggaaccacctgctgaactactacaaagagcagaaggtgctagtagaggga
ccactgaacaacctccgggaaagcctcatgcagttcagcaagcctcgtaaactcgtcaat
accatcaaccccggtgcccgtttcatgacaactgccatgtatgacgcacgtgaagctatt
atcccaggatctgtctatgacaggagcagtcaagggcgcccatccaacatgtacttccag
actcacgaccagattgggatgattagtgctgggcccagccacgtccctgcaatgaacatt
cctatccctttcaatcttgtcatgccaccaatgccgccaccaggatacttcgggcaggcc
aatggcccggcagcagggcgtggcacaccgaaagggaagactggccgtggcgggcgccag
aaaaatcgttttgggattcctggaaccagccagtcgaaccttcctaacagtcaagcgagc
caagacgtggtgtcccagcctttctcccagggtccactgactcagggctatatctccatg
agtcagccatcgcagatgagccagccaggactctcccaaccagaattatcacaggacagt
taccttggtgacgagtttaaatctcagattgatgtggcgctgtcacaggattctacctac
cagggtgaacgtgcatatcaacacggtggagtgacgggactgtcacagtattag
DBGET
integrated database retrieval system
