Gavialis gangeticus (Gharial): 109297289
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Entry
109297289 CDS
T07453
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03022
Basal transcription factors
ggn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109297289
09124 Replication and repair
03420 Nucleotide excision repair
109297289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ggn03021
]
109297289
03400 DNA repair and recombination proteins [BR:
ggn03400
]
109297289
Transcription machinery [BR:
ggn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109297289
DNA repair and recombination proteins [BR:
ggn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109297289
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
HscB_4_cys
IBR
Motif
Other DBs
NCBI-GeneID:
109297289
NCBI-ProteinID:
XP_019372508
LinkDB
All DBs
Position
Unknown
AA seq
395 aa
AA seq
DB search
MDDEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKKLFEHHGQVRLGMMRH
LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
SGNPRKHITALKKAVDMTCHGEPSLYNSLNLAMQTLKHMPGHTSREVLIIFSSLTTCDPS
NIYELIKCLKEVKIRVSIIGLSAEVRVCTVLARETGGTYHVILDESHYKELLIHHVTPPP
ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMVQLENNSDPGLTLGGYFCPQCRAKYCE
LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEVPLEEYQGERYCHGCQGEMKDQHVYIC
KVCQSAFCVDCDLFVHDSLHCCPGCIHKHPSSLSV
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgaacctgaaagaaccaaacgctgggaaggaggttatgaacgaacatgggag
attctcaaggaagatgagtctggatcactgaaagcaactatagaggatatactctttaag
gccaagagaaaaaaactcttcgaacatcatggccaagtcagacttggaatgatgcgtcat
ctttatgtggtggttgatgggtcaagaactatggaggaccaagatttaaaacctaacagg
cttacttgtaccttaaagttattggaatattttgttgaagaatactttgaccaaaatcct
atcagtcagattggtataattgtaactaaaagtaaaagagctgaaaagctgacagaactt
tcaggtaacccaagaaaacatataactgctttgaagaaggctgtagatatgacttgccat
ggagagccatctctgtataactccttaaatttggccatgcaaactttaaagcatatgcca
ggacatacaagcagagaggttttgataatcttcagtagcctgaccacatgtgatccatct
aatatctatgagctaatcaagtgtttaaaggaagttaaaatcagagtatccatcataggc
ctatctgctgaagttcgagtttgcactgtgcttgcccgagaaactggtggaacataccat
gtgattttagatgaaagccattataaggaactgctgatccaccatgttactcctcctcca
gccagttcaagttcagaatgctcccttattcgaatgggttttcctcagcatacaatagca
tctctctctgaccaggatgcaaaaccatcttttagcatggtgcagttggaaaacaacagt
gatccaggtctaacattaggtggatatttctgtccccagtgcagagccaaatactgtgaa
ctccctgtggaatgcaaaatctgtggtcttacattagtatcggcaccccatctggctcgg
tcttatcatcacctctttccgttggatgcctttcaggaagttccactggaagaatatcaa
ggggaacgctattgtcacggctgccaaggggagatgaaagaccaacatgtttacatttgc
aaagtctgtcagagtgcattttgtgtggactgtgacttgtttgttcatgattctctacac
tgctgtcctggctgtattcacaagcacccatcttctctgtctgtatga
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