Gavialis gangeticus (Gharial): 109297638
Help
Entry
109297638 CDS
T07453
Symbol
FREM1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1 isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109297638 (FREM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Lectin_C
Calx-beta
UL45
Motif
Other DBs
NCBI-GeneID:
109297638
NCBI-ProteinID:
XP_019373109
LinkDB
All DBs
Position
Unknown
AA seq
2186 aa
AA seq
DB search
MKPLENSWLFPLLTVILRCVCSSFISVNRGVKVMKGQSVFLSKDDLQFSIPRVKDACKVE
VVINEPITQRVGKLTPQIFDCHFLPDEVKYTHNGCPILDEDSVRLRLYRFTETETFTETF
TLQVQLLEPDCNVIKMSSNILEVPEFYGLSRVIDRNVLTFDYDRRINLECVITMASLETH
LPAHGQVVIGEPQQEEPRGDQPHSFFSTSKQRAAQSCRNGNCTQGLKTIQLTKMSCGEFL
LTGIRYQHLDPPSPNIDYIPIRVDLMDSRSKILHKTEYAWLPVRIKGAIPNQIPKAAFMA
TFVLEVDQFILSPMTTATIDAEDSETPKSLLVFNITKPPPQGYITHLSDHTRPITSFTWK
DLSEVLIAYQPPNNSHTERRNYEVEFEIHDLYYERSSPITVHISIRTTDTNAPRVSWNTG
LDLLEGQSRPITWQQFQIVDNDNISGVRLVTIDGLNHGHLTVRGGKGFMFTVSDLKTGVV
CYHHDDSDSTKDFVVFRIFDGRHSIRHKFPINILPKDDSPPFLISNVVIEVYEGQTVLIQ
GSMLQASDMDSSDDYIFFNMTKLLQAGEIMKKQGPDLIGYPVTGFFQRDLFNGIIYYRHF
GGEIFEDSLEFVLCDSHDPPNLSEPQVVIVHIIPVDDQLPKEDPGVTRHLIVKETEIAYL
TKKQLHFIDMEEKERDLIYTVTTSPFFSSIHGHSEAGKLFMVDSIPKLVKDPAALALRSF
TQHAVNYMKVAYMPPIQDIGPEPQHVQFVFSVSNQHGGNLFGICFNITILPVDNQTPEVF
TSHMKVEEGGLCTITWGHILLSDMDTKQENLHICLQRQPLHGAVLLDGFAMSEGDRFACE
DLHTLKVRYQHDGSETLNDDILFAATDGFHSIEFILQVKVLPVNDEPPVMKAGLIPLIQC
LEGEEVVITPEHIYATDADSDDMRLMFMQARKSYHGVVRKAGNIVDRFSQADVVSGIVTY
KHTSGEIGVNPCFDTLTFVISDGEAGPDVNDCCFDGPLPPPVPLHDSFPVYDLNITILPV
DNQPPSIATGAMFVVDEGFSAVLTTNHLFATDPDTAADDLEFVLVSPPQCGYIENILPSP
GFEKSNIGISIASFQLKHLKAFQVNYVQSRHVRMEPTSDQFMLYVTDGKHHSVETPFYVL
INPTNDEVPEFIARNITVQEGQIKELDPFVINAVDLDVPQDCLIFTVAQKPQHGFLISGT
YSNDIMHYKQLTSNHHNHGYPVHDFSMELLKNGMRLMYMHDDSETLADGFTIQLSDGKHK
VLRTISVKVIPVNDEKPVLSKKDEIEVNMGETRIISSAVLSAEDKDTPRERIYYLFERIP
ENGQLQLKVGRDWVTLQTGMNCTQEEIDLNLVRYVHTGAIGSKIQDSFTFHLWDGDNQSP
ALDFFISIKDMEKGDIAVFIRPLTVSKGDRSYITTDALLAIDGTDKPEELLYVITSPPQY
GQIEYVSFPEIPITSFSQMDIAGQAVCYVHSSKAAAPEDTFRFSISNGLRTKHGMFTITL
ETMDQALPTVSRNKGLRLVEGAMALISPDVLQISDPDTSSKNLTFLLAQLPQYGQLYYRG
AVLLQHNFTQQDVDNMDVAYKHGGGDSQIDRFTYVATDRTNQGFIINGRVQVEPVAFTIQ
VDHLDRTAPKIVHLHCSCNVELLKNGNFGIYITARSLKASHPNIEDDQIIFKILQGPRYG
YLENTTTGRCIQEEFSQKDLNSKIVLYVINPTWAVNSDSLEFQVTDPTGNSGTPQILELK
WSRIEMQQAAYEVCENVGILSLKITRSGHSADSAFVTVKVNEASAVLGKDFTIPPSKLIQ
FDPGMSTKKWNIVITYDGLEEDDEVFEVVLNSPVNAILGTRTKAVVKILDSKGDQCSFFH
SSGQSKHNLWRTDTLLPVSSSSLLPSSPGTVHLERIPLSSSKGMMMQKGNMLPEFKLVNR
SRTKLRAVGNGKIVPPSSVFRNGTDVVFKYHGLVSLRVEEDTSSANANKKAEVLVINQGE
LKSNVVSSRKTEVPQADNPELTSVLHSSHQDLGLSFPRGCTSDLKGLLHYEERVQKLFQC
DGISWKLWDSKSKMVNLKKCPSGWSHHDGSCYFLIAEHKVTWNTAAQACREQYFGNLASV
VTKQHMQWLWNFSGRKPFWIGLNDQENPGHWEWNGGEPVTYTNWRTVSSRLSRKGKNCVL
VQRQGKWQAADCRKGRRHNYVCSRKL
NT seq
6561 nt
NT seq
+upstream
nt +downstream
nt
atgaagccccttgagaacagctggctgtttccactgctcactgttatcctgagatgcgtc
tgttcctcctttatcagtgtcaaccgtggggtaaaagtgatgaagggacagtctgtcttt
ctgtcaaaagatgacctgcagttttctatccccagagtgaaagatgcctgcaaagtggaa
gttgtgattaatgagccaataacacagagggttgggaaactaactccacagatttttgac
tgtcatttccttcctgatgaagtcaagtatactcacaatggctgtcccattttagatgaa
gactcagtcaggcttaggctgtacaggtttacagaaactgaaacattcacagaaacattc
acccttcaggtgcagttacttgagccagactgcaatgtcatcaaaatgagttccaacatc
ttggaagtccccgagttttatggcctgtccagagtgattgacaggaatgtgctcactttt
gactatgacaggaggataaacctagagtgtgtcattacaatggcctccttagaaactcat
ctaccagcccacggtcaagttgtcattggagaacctcaacaggaagaacctcgtggagac
caaccacatagcttcttttccacttctaagcagagagcagcccagagctgcaggaatggg
aactgcactcaaggactgaagaccattcaactcaccaaaatgagctgtggagaatttctg
ctgactgggattcgatatcagcatcttgatcctccttcacccaacattgattatattcct
attcgagtggatctcatggacagcagaagcaaaattctgcacaagacagagtatgcctgg
ctccctgtccgtatcaaaggtgccattcccaaccagatccccaaagctgccttcatggca
acattcgtgttggaggtggaccagtttattttgagtcccatgacaacagcaacaatagat
gctgaagacagtgaaacacctaaatccttgctagttttcaacattacgaagccaccacca
cagggctacatcactcatctgtcagaccacaccaggcctatcacctctttcacatggaaa
gatctcagtgaggtgcttatagcatatcagcctccaaacaacagccatacagagaggagg
aattatgaggtggagtttgagattcatgacttatactatgaaaggagttcaccaatcact
gtccatatctctattagaacaacagatacaaatgctcctcgggtttcatggaacacaggt
ctcgatctcctagaggggcaatcccgaccaatcacatggcaacagtttcaaattgtagac
aatgacaacattagtggtgttcgtttggtcacaattgatggcttgaatcatgggcacctc
actgtaagaggggggaaaggattcatgttcacagtctctgatcttaagactggagttgtt
tgctaccatcacgatgacagtgactctacaaaggattttgtggtcttcaggatttttgat
ggccgacacagtattcgtcacaagtttccaatcaacattctgcctaaagatgacagtccc
cctttccttatcagcaatgttgttattgaagtgtatgaagggcagacagttttgattcaa
ggctccatgcttcaggcttctgacatggactccagtgatgactacatattctttaatatg
accaaactattgcaggctggggaaattatgaagaaacaagggccagacctcataggatat
cctgtcactggcttctttcagagagatctattcaatggaataatttattatcggcacttt
ggaggagaaatatttgaagattccctggagtttgtcctttgtgatagccatgaccctccc
aatctctcagagccacaggtggtgatagtgcatattattcctgtggatgatcagcttcca
aaagaagatccaggggttacccgtcacctgattgtcaaggaaactgagattgcttatcta
actaagaaacagctccatttcatagacatggaagaaaaagagagggacctcatctacaca
gtaaccacttccccattcttctcttccattcatggccactcagaggctggaaagttattt
atggtggacagcatacccaagctagtcaaggatcctgctgctctggcactgagatcattc
actcagcatgccgtgaactacatgaaagttgcctacatgccccctatccaggacattggg
cctgagccgcagcatgtccagtttgttttttcagtcagcaatcaacatggcgggaacttg
tttgggatctgctttaacattacaattcttcctgtcgacaatcaaactcctgaggtattt
accagccatatgaaagtggaagaagggggactgtgtaccattacctgggggcacattctc
ctctcagatatggacacaaaacaagagaacctccacatctgcctccagagacagcctctg
catggagctgttttgctagatggctttgctatgagtgaaggtgacagatttgcctgtgag
gatctgcacactcttaaagtcaggtatcagcacgatggctctgagactctgaatgatgac
atcctctttgcagccacagatggctttcattctatagagttcatcttacaggtcaaggtg
ctacctgtgaatgatgagccacctgtcatgaaagctggcctcattcccctaatacagtgt
ctggaaggggaggaagtagttatcactccagagcatatttatgccactgatgcagacagt
gatgacatgaggctgatgtttatgcaggctcgaaagtcctaccatggggtggtgagaaaa
gctggtaacattgtggatcgattttcccaagctgatgttgtctctggcatagtgacctac
aagcacactagtggggagattggcgtgaatccttgttttgacaccctaacctttgttatc
tctgatggtgaagctggcccagatgtcaatgactgctgttttgatggacctcttcctcct
ccagtaccacttcatgattcgtttccagtatatgatctaaacattactatacttccagtg
gacaaccagccaccatccattgcaactggtgccatgtttgttgtggatgagggtttctca
gctgtgcttactactaaccatttgtttgccactgaccctgacaccgcagccgatgactta
gagtttgttttggtttctcctccccagtgtggttacattgaaaatatactaccttctcct
ggttttgaaaagagcaacattggtataagtatagcttcatttcagcttaaacatctgaaa
gccttccaggtcaactatgtacaatccaggcatgtgaggatggaaccaacttcagaccag
tttatgctttatgtcactgatgggaagcatcattcagtagagacgccattttatgtcctg
atcaacccaacaaatgatgaagtcccagaattcatagcaaggaacattactgtgcaggag
gggcagataaaagaactggatccctttgtaattaacgcagttgatttggatgtacctcag
gattgcttgatatttactgttgctcagaagccccagcatggattcctcattagtggaact
tacagcaatgatatcatgcattacaaacaactaactagcaatcaccacaaccatggatat
cctgtgcatgacttttctatggagcttcttaagaatggaatgaggttgatgtacatgcat
gatgactctgagactcttgctgatggttttacaatccagctatcagatgggaaacataaa
gtcctcagaaccatttcagtaaaggtcattccagttaatgatgagaaaccagtgctgagc
aagaaggatgagatagaggtgaacatgggtgaaactcgaatcatttctagtgctgttctg
tcagccgaagataaagacacccccagggaaagaatttactatttatttgaaagaattcca
gaaaatgggcagcttcagctcaaggtaggcagggactgggtgactctccaaactggaatg
aactgcactcaggaagaaatagatctgaaccttgtgagatatgtgcatacaggagctata
ggatccaagatccaagacagtttcacatttcatctgtgggatggagacaaccagtcccca
gcactggacttcttcatcagcatcaaggacatggagaagggagatattgctgtttttata
aggccacttactgtgtcgaagggggatagaagctacataacgacggatgcccttcttgct
attgatggaactgacaaaccagaggaactcctctatgtgataacatctccacctcagtat
ggacagatagagtacgtcagctttccagaaatccccatcacaagtttcagccaaatggat
atagcaggccaggcagtctgctatgtccacagtagcaaggcagctgctcctgaagataca
ttcagattcagcatcagcaatggactgaggactaaacatgggatgttcacgatcactctg
gagacaatggaccaagctttgcctacagtgtctaggaacaaagggttgagattagtggaa
ggtgctatggcactcatttctcctgatgtcctgcagatttcagacccagacacttcctca
aagaaccttaccttcctcttggcacagctccctcaatatggccaactgtattaccgaggg
gctgtactcctgcagcacaatttcacccagcaagatgtggacaacatggatgtagcatat
aaacatggaggaggggattcccagattgacagatttacatatgtggcaacagataggact
aatcaaggcttcatcataaatgggagggtgcaagtagagccggtggcattcaccattcag
gtggaccatttggacagaactgcaccaaaaattgttcatctccattgttcttgtaatgtg
gagctcctgaagaatggcaattttgggatttatattactgccaggtccctgaaagcatct
catcccaatatagaagatgaccaaatcatttttaagattttacaaggtcctcgctatggc
tacctggaaaatacaacaacaggcaggtgcatccaggaggaattcagccaaaaagattta
aatagcaaaatcgtactttatgtcatcaatccaacttgggcagtgaattcagacagcttg
gagtttcaagtcacagatcccactgggaactctggcaccccccaaattctggaactgaag
tggtctcgaattgaaatgcaacaggctgcatatgaagtgtgtgagaatgtgggaatcttg
tctttgaaaatcaccaggtcagggcattccgcagactctgcctttgtcacagtgaaggtc
aatgaagcgtctgctgtacttggcaaggattttactatacctccttctaagctcattcag
tttgatccaggaatgtcaaccaagaagtggaatatagtaattacctatgacggattagag
gaagatgatgaagtctttgaagtagttctgaactcccctgtgaatgcaattcttggcacc
aggacaaaagctgtagtgaaaattttggactcaaaaggagatcagtgcagctttttccat
tcctctggccaaagcaagcacaacttatggaggacagacacattgcttccagtttcctcc
agctccttattgccctccagccctggcactgttcacttggaaaggatcccactgtcctct
tccaaagggatgatgatgcagaaggggaatatgctaccggaattcaagttggtgaatcgg
tcaagaactaaactaagagcagttggaaatggcaaaatagttcctccatcatccgtgttt
agaaatggaactgatgtggtttttaaatatcatgggctagtatctctcagagtagaagaa
gatacttcatcagctaatgcaaacaaaaaggctgaagtgttggtaattaaccaaggggag
ctgaaaagcaatgtggtctcctccaggaagacagaagtcccacaagctgataatccagag
ctgacatctgtattacattctagccatcaggatctgggtctctcctttccaaggggctgc
acatcagatttaaaggggctcttgcattatgaagaaagagtccaaaaattatttcagtgt
gatggcatttcatggaagttatgggattcaaaaagcaagatggttaacctgaaaaaatgc
ccctctggatggagccatcatgatggtagctgctatttcctaatagctgagcacaaggtc
acctggaataccgctgctcaggcttgccgggaacagtactttgggaatctagcaagtgtg
gtcactaaacaacacatgcagtggttgtggaacttcagtggaaggaagcctttttggata
ggcttgaatgaccaagaaaatcctggccattgggagtggaatggaggagaaccagtcact
tacacaaactggagaacagtctcttctcgtctttcaaggaagggaaagaattgtgttttg
gtacagaggcaagggaaatggcaagcagcagattgcagaaaaggcagacggcacaattat
gtgtgttcaagaaagctgtaa
DBGET
integrated database retrieval system
