Gavialis gangeticus (Gharial): 109303192
Help
Entry
109303192 CDS
T07453
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
109303192 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ggn03400
]
109303192 (LIG4)
Enzymes [BR:
ggn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
109303192 (LIG4)
DNA repair and recombination proteins [BR:
ggn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
109303192 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Ribosomal_S5_C
SSPI
Motif
Other DBs
NCBI-GeneID:
109303192
NCBI-ProteinID:
XP_019380885
LinkDB
All DBs
Position
Unknown
AA seq
914 aa
AA seq
DB search
MMSSTPAAQSSSKQTVASQVPFADLCSTLERMKKCKSRPEKTKYFQDFLDSWRKFHGALH
KKEKNVMDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKEGKDALKLLNYRT
PAGSRGDAGDFAMIAYFVLKPRCPEQGKLTIEQVNELLDSIASNNAAKRKDLVKKSLLQL
ITQSSALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVS
LTDVSIALFSAFKPMLAAIANIQQIEKQMNNQRFYIETKLDGERMQMHKDGDVYKYFSRN
GYDYTQQFGPSPLEGSLTPFIHNVFKSTIQNCILDGEMMAYNPNTQTFMQKGNKFDIKRM
VEESDLQTCFCVFDVLMVNDQKLGHEILSKRYEIMNEVFTPVAGRIHVVHKTHGSTRKEV
VDALNEAIDNREEGIMVKDPMSLYKPDKRGEGWLKIKPEYVTGLMDELDLLIVGGYWGKG
LRGGMMSHFLCAVAETPPPGGKPSVFHSICRVGSGYTMKELYDLGLKLAKHWKPYRKREP
PCNILCGTEKPEVYIEPCNSVIVQIKAAEIVTSDMYKTDCTLRFPRIEKIREDKEWHECM
TLSMLEQLRGRASGKLASKHLDVANNEPQEKKRKTVPKIKKIIGIAEQFKAPDLSNVSKV
SNVFEDVEFCVLTGTENHSKSDLESKIAECGGNVVQNPGPDTYCIIAGIENVRVKNVISS
NKHDVVRAEWLLQCFQTKMFVPWQPAFMIHMTPDTKQHFAREFDCYGDSYSADIDVAQLK
EVFSRVSNSIDAKMPLEVIGELEERYSWDSHPLSMFRRNTIYLDLYAVVNDPKTKICGTR
LTIRALDLRFYGAKVVSQLKEGVSHVVMGEDRARVKEIKMLRRTFEKKFKILSELWVTDS
IREGKLQSENQYLI
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcatctacacctgctgcacagtcatcgtctaagcaaactgtagcatcccaagtg
ccttttgcagatctctgctcaactttagaacggatgaagaaatgcaaatcccgcccagag
aaaaccaagtatttccaggattttttagattcatggaggaagtttcatggtgccctccat
aaaaaggagaagaatgtcatggactctttttatcccgcaatgcgacttattcttccacaa
ctggaaagagaaagaatggcttatggaataaaagaaaccatgcttgctaagctgtatatt
gaactacttaatttacccaaagaaggaaaagatgccctaaagcttttaaattatagaaca
ccagctggttcacgtggagatgctggggactttgcaatgattgcctactttgtattgaaa
cccaggtgcccagagcaaggcaaattgactattgaacaagtgaatgaacttctagattca
attgccagtaataatgctgctaaaagaaaggacctggtaaagaaaagtctccttcaatta
ataactcagagctcagcacttgaacaaaagtggttgatccggatgattataaaggatcta
aaacttggtgtgagtcagcaaaccatattttccatttttcatcctgatgctgctgaatta
cacaatgtcacgaccgatctggagaaagtttgcagacagctgcatgacccttctgtatct
ctcactgacgtttccattgcattgttttctgcctttaaaccaatgcttgctgctattgct
aatatccagcaaattgagaagcaaatgaacaaccagcgtttctacatagaaactaagcta
gatggtgagcgtatgcagatgcacaaagatggagacgtatacaagtatttttccagaaat
ggatatgattatacccagcagtttgggccgtctcccctagaaggttcgttaactccattt
attcataacgtgtttaaaagtaccatacaaaactgcattcttgatggtgaaatgatggct
tacaatcccaacacacaaactttcatgcagaagggaaacaaatttgacataaaaagaatg
gtggaggaatctgatctgcaaacgtgcttctgtgtgtttgatgtactaatggttaatgac
cagaagttgggtcatgagatactaagcaaaaggtatgagattatgaatgaggtatttacc
ccagtcgcaggcagaatacatgttgtgcacaaaacacacggtagtaccagaaaagaagtg
gtcgatgcgctgaatgaagcaatagacaacagggaagaaggaatcatggtaaaagatcct
atgtccctctacaagccggacaaacgtggagagggctggctgaaaatcaaaccagagtat
gtcactggcttgatggatgaattagatcttttaattgttggtggctactggggaaaaggg
ttgcgtggtggcatgatgtctcattttctgtgtgctgttgcagagactccccctcctggt
ggaaagccatctgtttttcactctatttgtcgtgttggttctggctatactatgaaggaa
ctttatgatcttggtctgaaactggctaagcactggaagccttaccgtaaaagagagccc
ccttgtaacattttatgtgggactgagaaacctgaggtctacatcgaaccttgtaactcg
gtcatagttcagattaaagcagcagagattgttaccagtgatatgtacaaaaccgactgc
actttacgatttcctcgaattgagaaaataagagaggacaaggagtggcatgaatgcatg
actttgagtatgttagaacagctcagaggcagagcatcaggaaagctagcatcaaagcac
cttgatgtagctaataatgaaccacaagaaaagaaacggaaaactgtgccaaagattaag
aaaataattggtattgctgagcagtttaaagcccctgatctttctaatgtaagcaaggtg
tcaaatgtttttgaagatgttgagttttgcgttctgactggaacagaaaaccattcaaaa
tccgaccttgaaagcaaaattgcagaatgtggtggcaatgtagtacagaatcctggaccg
gacacttattgcatcattgcaggaattgagaatgtaagagtgaagaacgttatctcttcc
aataagcatgatgttgtgagagcagagtggcttttacagtgttttcaaaccaaaatgttt
gtaccatggcagcctgcttttatgattcacatgactccagacacaaaacaacattttgca
cgtgaatttgactgttacggtgacagctactcggcagatatagatgtggctcaactaaag
gaagtgttctcaagagtcagtaatagtattgatgcaaagatgcctctggaagtaattggt
gaattggaagaacggtactcgtgggacagtcatccactcagtatgtttaggcgaaacacc
atatacctggacctttatgctgttgttaatgatcctaaaaccaagatctgtggaacaagg
ctaacaattagagctttggacctccgtttttatggagcaaaagttgtctcgcagctaaag
gaaggagtgtcccatgtcgttatgggagaagatcgtgcccgtgtgaaagaaataaaaatg
cttagaagaacatttgaaaaaaaatttaaaattctgtctgaactgtgggtaacagattcc
ataagggaaggaaagctgcagagtgaaaatcagtacttaatttag
DBGET
integrated database retrieval system
