KEGG   Gorilla gorilla gorilla (western lowland gorilla): 101127133
Entry
101127133         CDS       T02442                                 
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X4
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ggo  Gorilla gorilla gorilla (western lowland gorilla)
Pathway
ggo03030  DNA replication
ggo03410  Base excision repair
ggo03420  Nucleotide excision repair
ggo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ggo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    101127133 (LIG1)
   03410 Base excision repair
    101127133 (LIG1)
   03420 Nucleotide excision repair
    101127133 (LIG1)
   03430 Mismatch repair
    101127133 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ggo03032]
    101127133 (LIG1)
   03400 DNA repair and recombination proteins [BR:ggo03400]
    101127133 (LIG1)
Enzymes [BR:ggo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     101127133 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     101127133 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     101127133 (LIG1)
DNA replication proteins [BR:ggo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    101127133 (LIG1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     101127133 (LIG1)
DNA repair and recombination proteins [BR:ggo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     101127133 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     101127133 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     101127133 (LIG1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase PucR DUF1685
Other DBs
NCBI-GeneID: 101127133
NCBI-ProteinID: XP_030860153
Ensembl: ENSGGOG00000015042
LinkDB
Position
20:join(61791222..61791238,61794445..61794534,61795293..61795428,61799655..61799781,61802808..61802903,61805283..61805390,61806416..61806538,61806786..61806864,61812662..61812742,61813030..61813086,61816495..61816667,61818952..61819118,61819556..61819632,61820513..61820604,61820860..61820959,61822572..61822657,61823541..61823656,61825463..61825558,61827897..61828007,61828565..61828636,61832586..61832730,61832888..61832970,61834571..61834723,61836689..61836742,61837089..61837232,61838910..61839002,61839146..61839229)
AA seq 919 aa
MQRSIMSFFHPKKEGKAKKPEKEASNSSRETEPPPKAALKEWNGVVSESDSPVKRPGRKA
ARVLGSEGEEEDEALSPAKGQKPALDCSQVSPPRPATSPENNASLSDTSPMDSSPSGIPK
RRTARKQLPKRTIQEVLEEQSEDEDREAKRKKEEEEAETPKESLTEAEVATEKEGEDGDQ
PTTPPKSLKTSKAETPTEGGSEPEVASKQELQEEEEPTKPPPRAPRTLSSFFTPRKPAVK
KEVKEEEPGAPGKEGAAEGPLDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIE
EVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQ
ATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSAST
AKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAV
VDAGKGKAAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPL
KPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPD
IISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAF
DLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDVEQIAEFLEQSVKDSCE
GLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLL
ASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVIPDHWLDPSA
VWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQ
SQIQNQQGEDSGSDPEDTY
NT seq 2760 nt   +upstreamnt  +downstreamnt
atgcagcgaagtatcatgtcatttttccaccccaagaaagagggtaaagcgaagaagcct
gagaaggaggcatccaatagcagcagagagacggagccccctccaaaggcggcactgaag
gaatggaatggagtggtgtctgagagtgactctccggtgaagaggccagggaggaaggcg
gcccgagtcctgggcagcgaaggggaagaggaggatgaagcccttagccctgctaaaggc
cagaagcctgccctggactgctcacaggtctccccgccccgtcctgccacatctcctgaa
aacaatgcttccctctctgacacctctcccatggacagttccccatcagggattccgaag
cgtcgcacagctcggaagcagctcccgaaacggaccattcaggaagtcctggaagagcag
agtgaggacgaggacagagaagccaagaggaagaaggaggaggaagaagcggagaccccg
aaagaaagcctcacagaggctgaagtggcaacagagaaggaaggagaagacggggaccag
cccaccacgcctcccaagtccctaaagacctccaaagcagagaccccgacggaaggcggt
tcagagcctgaggtggcctcgaagcaggaactgcaggaggaggaagagccgaccaagcct
ccccccagagctcccaggacgctcagcagcttcttcaccccccggaagccagcagtcaaa
aaagaagtgaaggaagaggagccaggggctccaggaaaggagggagctgctgagggaccc
ctggatccatccggttacaatcctgccaagaacaactatcatcccgtggaagatgcctgc
tggaaaccgggccagaaggttccttacctggccgtggcccggacgtttgagaagatcgag
gaggtgtctgctcggctccggatggtggagacgctgagcaacttgctgcgctccgtggtg
gccctgtcgcctccagacctcctccctgtcctctacctcagcctcaaccaccttgggccg
ccccagcagggcctggagcttggcgtgggtgatggtgtccttctcaaggcagtggcccag
gccacaggtcgccagctggagtccgtccgggctgaggcagctgagaaaggcgacgtgggg
ctggtggccgagaacagccgcagcacccagaggctcatgctgccaccacctccgctcact
gcctccggggtcttcagcaagttccgcgacatcgccaggctcactggcagtgcttccaca
gccaagaagatagacatcatcaaaggcctctttgtggcctgccgccactcagaagcccgg
ttcatcgccaggtccctgagcggacggctgcgccttgggctggcagagcagtcggtgctg
gctgccctctcccaggcagtgagcctcacgcccccgggccaagaattcccaccagccgtg
gtggatgctgggaagggcaaggcagcagaggccagaaagacgtggctggaggagcaaggc
atgatcctgaagcagacgttctgcgaggttcccgacctggaccgaattatccccgtgctg
ctggagcacggcctggaacgtctcccggagcactgcaagctgagcccagggattcccctg
aaaccaatgttggcccatcccacgcggggtgtcagcgaggtcctgaaacgctttgaggag
gcagctttcacctgtgaatacaaatatgacgggcagagggcacagatccacgccctggaa
ggcggggaggtgaagatcttcagcaggaatcaggaagacaacactgggaagtacccggac
atcatcagccgcatccccaagattaaactcccatcagtcacatccttcatcctggacacc
gaagccgtggcttgggaccgggaaaagaagcagatccagccattccaagtgctcaccacc
cgcaaacgcaaggaggtggatgcatccgagatccaggtgcaggtgtgtttgtacgctttc
gacctcatctacctcaatggagagtccctggtacgtgagcccctttcccggcgccggcag
ctgctccgggagaactttgtggagacagagggcgagtttgtcttcgccacctccctggac
accaaggatgtcgagcagatcgccgagttcctggagcagtcggtgaaagactcctgcgag
ggactgatggtgaagaccctggatgttgatgccacctacgagatcgccaagagatcgcac
aactggctcaagctgaagaaggactaccttgatggcgtgggtgacaccctggacctggtg
gtgatcggcgcctacctgggccgggggaagcgggccggccggtacgggggcttcctgctg
gcctcctacgacgaggacagtgaggagctgcaggccatatgcaagcttggaactggcttc
agcgacgaggagctggaggagcatcaccagagcctcaaggccctggtgctgcccagccca
cgcccttacgtgcggatagatggcgctgtgattcccgaccactggctggaccccagcgcc
gtgtgggaggtgaagtgcgctgacctctccctctcccccatctaccctgctgcgcggggc
ctggtggatagtgacaagggcatctcccttcgcttccctcggtttattcgagtccgtgaa
gacaaacagccggagcaggccaccaccagtgcccaggtggcctgtttgtaccggaagcaa
agtcagattcagaaccaacaaggcgaggactcaggctctgaccctgaagatacctactaa

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