Gemmatimonas groenlandica: HKW67_01510
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Entry
HKW67_01510 CDS
T07783
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ggr
Gemmatimonas groenlandica
Pathway
ggr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ggr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HKW67_01510 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ggr03400
]
HKW67_01510 (ligD)
Enzymes [BR:
ggr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HKW67_01510 (ligD)
DNA repair and recombination proteins [BR:
ggr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HKW67_01510 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QJR34288
UniProt:
A0A6M4IK99
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All DBs
Position
365976..367865
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AA seq
629 aa
AA seq
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MRATFAPMLATSGTVLPAADGWAFEPKYDGIRVIAVASSTNVQLLSRNGIDKSAQFPEVV
EALQAFVGRRRSTLVLDGELVGVEGGALGRFQSMQARVHERDAQVIATRRSAQPVALMVF
DLLHDGARSLVDAPWRKRRVALERLFTVRAVSGGRALGALRLGDAVLHDHHALLARATAE
GWEGIMAKRADAPYAVGVRSRDWLKLKLERQQEFVVGGWTEPRNSRPYLGALLLGYYRDG
ALHYAGHVGTGFTHDELAWLHAHLKRLERGSSPFVTTPAANATAHWVRPILVVEVRFNEW
TNDGHLRQPAYLGVRTDKRARDIVREAVMPRATATPSADAEVQFTNLDKIFYPKAKKTKG
DMVRYYTTIAPLLLPFIADRPLVLRRYPNGIGQPAFFQQRVAKGVPSTVRTEMVPQPDGS
SERRIVGGELTTLLYCAQLGAIDVNPWHSRVATLSAADYSIIDLDPGEGATFRRVIDVAR
WTREVMDELGIAGALKTSGASGLHIYLPLPPGTSYDSALLLAKVIATRVVKGHSKQATVT
RTVSKRVRGSVYVDYLQNVQGKSVASVFSLRAQPAASVSTPLRWDELTNDLDPRDFTIDT
VPSQAATRATLWSRTLATPNDLESLQSAW
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgagggcgacgttcgcaccgatgctggccacgtcgggaaccgtgctccccgcggctgac
ggttgggcgttcgaacccaagtatgacgggatacgggtgatcgccgtggcgtcgagcacg
aacgtgcagctgctatcgcgaaacgggatcgacaagtccgcgcaattccccgaggtcgtg
gaagcgctgcaggcgttcgtggggcgccggcgcagcaccctcgtgctggacggtgagctg
gtgggagtggaaggcggcgccctcggccgtttccagtcaatgcaggctcgcgtgcatgaa
cgcgacgcgcaggtgatcgccacgcgccggtcggcccagccggtcgcgctcatggtgttc
gacctgctgcacgatggcgcgcgatcactcgttgatgcgccatggcgtaagcggcgcgtc
gcactcgagcggctattcacggtgcgtgcggtgtccggcggccgcgccctcggcgcgctt
cgactgggcgatgccgtcttgcacgaccatcacgcgctgttggcccgggcgacggcggaa
ggctgggaaggcatcatggccaagcgcgcggatgcgccgtatgccgtcggtgtgcgttca
cgcgactggctcaagctcaagctggagcgtcaacaggagttcgtggtgggcggctggacg
gagccgcggaacagccgaccgtacctcggcgcactcctgctgggatactatcgggacggg
gcgctgcactacgcgggccatgtcggcacagggtttacgcacgacgagctggcgtggctg
cacgctcacctgaagcgccttgagcgcgggtcaagtccatttgtcacgacgccggcggcg
aacgccaccgcacactgggtccggccgatactggtggtcgaagtccgcttcaacgaatgg
accaacgatggtcacctccgacagccggcctatctcggcgtccgaaccgacaagcgtgcg
cgcgatatcgtgcgggaggcggttatgccacgagcgacagcgacaccaagcgccgacgcc
gaggtgcagttcaccaacctcgacaagatcttctatcccaaagcaaagaagaccaaaggc
gacatggtgcggtactacacgaccatcgcgccgctattgctacccttcatcgctgaccgg
ccgctggttttgcggcgctatccgaacggcatcggtcagccggcattctttcagcagcgt
gtcgccaaaggggtgccgtcgaccgtgcgcaccgagatggtgccgcaacccgacggctcg
agcgagcgacgcatcgtcggtggtgagctgaccacgctgctgtattgtgcgcagctcggt
gccatcgacgtgaatccgtggcactcccgcgtcgcgacgctgtcggctgccgactattcg
atcatcgacctcgaccccggcgaaggcgccacctttcgtcgcgtgatcgacgtggcgcgc
tggaccagggaggtgatggacgagctcgggatcgccggcgcactcaagacgtcgggagcg
agcggcctccacatctacctgccgctcccgccgggcacgagctacgacagtgcgctgctg
ttggcaaaggtgatcgcgacgcgggttgtgaaagggcacagcaagcaagcgaccgtgacg
cgcaccgtgagtaagcgcgtacgaggcagcgtgtacgtcgactacttgcagaatgtgcag
ggcaagagcgtcgcgtcggtgttcagtctgcgcgcgcaaccggcggcgtcggtgtcgacg
ccgctcaggtgggatgagctcaccaatgatctcgatccccgtgactttacgatcgacacc
gtgccgtcgcaggcggctacgcgcgcgacgctctggtcgcgcacgctggcgacgccgaat
gacctagagtcgcttcaatcggcctggtga
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