Gossypium hirsutum (upland cotton): 107891856
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Entry
107891856 CDS
T04793
Name
(RefSeq) exopolygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Module
ghi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107891856
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
107891856
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
107891856
NCBI-ProteinID:
XP_016672267
UniProt:
A0A1U8I201
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Position
D09:31753439..31755564
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AA seq
420 aa
AA seq
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MASMRLLAIIAILVQGLVIGDSQEFPSFDPELAVAKVLEVAEGKVGPDVKIFNVVDFGAK
PDGATTSTINFIRAFKEACNHNGRAMLVIPEGNFVVGSMLLSGPCTFQPPLMVQFAGNLL
PQGSTVAAENADWITFMNFNGLFISGKGIINGQGEKKAWNSVCDGCRRQSASLKLIKLND
VLISGITSVNSKGFHMMISVCSNFVITNVNISAPDESPNTDGIHMSKTNKVRISDSIIGT
GDDCVSMIHGTTNVTIENVKCGPGHGFSIGSLGHYEDEFDVFGITVRNCSLSHTENGARI
KTYRNESPSKASGIIFQDLIMDNVKNPILIDQEYATIKGSVDSKVLISDVEFSNIRGTTI
SKIAIVLACSPTFPCQGITLKDIHLEYSGPPDHNEDTPFSSNCTNVKVNYIGEQMPPPCA
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaatgaggctccttgcaataattgccattctggttcagggcttagttattggt
gattctcaagagttccctagtttcgatccggaactagccgtagccaaagttttggaagtt
gctgaaggcaaggtcggccctgatgttaaaatttttaatgtggtggatttcggtgccaag
cccgatggagccaccactagcaccatcaattttattagggcattcaaagaagcttgcaat
cacaatggccgtgcaatgctggtgatccctgagggaaatttcgtagtaggatcgatgtta
ttgtccggaccttgcacttttcaacctccgttgatggttcaattcgccggaaaccttttg
ccgcaaggttcaacggttgcggccgaaaatgcagactggatcacattcatgaactttaat
ggcttgttcataagtggaaaaggtatcatcaatggccaaggcgagaagaaggcatggaac
tctgtatgcgatggttgccgtcgacagtctgctagtttgaagttaatcaagttgaacgac
gtgctcattagtggcattacctccgtcaactctaaagggttccatatgatgatcagcgtt
tgcagcaacttcgtgatcaccaacgttaatatatcggctccggatgaaagccccaacacg
gacggcattcacatgagcaaaacaaataaggtcagaataagcgacagtatcatcggcact
ggcgacgattgtgtctcaatgatccatggaaccaccaacgtcaccattgagaacgtcaaa
tgtggccccggacacggtttcagtattggtagtcttggacactacgaagatgagttcgat
gtttttggaatcaccgtgaggaattgctcattatcccacacagaaaatggtgcaagaatc
aaaacatacagaaatgaaagtccatctaaagcttcaggcattattttccaagatctcatc
atggacaatgttaagaaccctattctcatcgatcaagaatatgcaacgattaaaggcagt
gtggactcaaaagtgctcatctccgacgttgaattctcaaacatcagaggaacaacaata
agcaaaattgctatagtcctagcttgcagcccaacatttccatgccaaggcattaccctc
aaggacattcacttagagtattccggtcctcccgatcataatgaagacactcccttcagt
tctaactgcaccaacgtcaaagttaactacatcggcgagcagatgccaccgccctgcgct
taa
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