Gossypium hirsutum (upland cotton): 107901761
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Entry
107901761 CDS
T04793
Name
(RefSeq) polyadenylate-binding protein 3
KO
K13126
polyadenylate-binding protein
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107901761
09123 Folding, sorting and degradation
03018 RNA degradation
107901761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107901761
03041 Spliceosome [BR:
ghi03041
]
107901761
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107901761
mRNA cycle factors
Stress granule specific factors
107901761
Spliceosome [BR:
ghi03041
]
Complex C
Other components
Complex C specific factors
107901761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_occluded
RRM_3
RRM_7
SET_assoc
YflT
DM9
DUF134
Motif
Other DBs
NCBI-GeneID:
107901761
NCBI-ProteinID:
XP_016683388
UniProt:
A0A1U8IZ78
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All DBs
Position
D06:complement(32043925..32050083)
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AA seq
644 aa
AA seq
DB search
MATATTAVPVAPETAGGAAVGSGYMNVSLYVGDLEENVVEGQLYDLFGQVGTVLSIRICR
DQNKRSSLGYAYVNYSNYQDAAHAKEMFNFTPINGKPIRIMFSQRDPIIRKTGYANVFIK
NLDPAIDNKALYDIFVAFGNVLSCKVATDRNGQAKGFGYVQFENDEAAQNAIKRLNGMLI
NDKQVYVGRHVRRQERVPANVTPKFTNVYVKNLSETTSDEDLKKVFGTYGTITSVVVMKD
QNGKSRCFGFVNFQSPDAAAAAVEKLNGMKNDDKTWYVGRAQRKAEREAELKAKFEQERT
SRYEKLQAANLYLKNLDDSIDTEKLKELFSEFGTITSCMVMLDPQGVSKGSGFVAFSTPE
EASKALNAMNGKMIGKKPLYVAVAQRKEERKARLQSYFAQLRTQGAMSPLASGVPGYHSG
PHRLDLQQLYYGQGSPGLLHPQPAGYGYQQQLIPGIRPGVTPNYIMPYNLQRQRGQPGQR
MGVRRGGNSQQMLQQQVLHRNTNEGLGYMGNARDGVDQSTVTQSVVGPILPLPYGVSRMP
VNPVEVQRPNPVHISTLISALASASPRERNKMLGEQLYPLVQGFEPEHAGKVTGMLLEMD
QTEVLHLIESPDASKEKVAEAMAVLRDSAAGESDASKELVIGTD
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggccacgacggcggttcctgtggctccggaaacggcagggggcgcggcggtg
ggaagtggttatatgaatgtgtcgctttacgtgggggatctggaggagaacgtggtggaa
gggcaattgtatgatctgtttggccaagttggaactgttctttccattagaatttgtagg
gatcagaataagcgatcttctctcggttatgcttacgtcaattacagcaattaccaagac
gctgctcatgccaaggaaatgtttaacttcactcccatcaatggaaaacctatacgaatt
atgttttctcaacgcgatcctattattcgtaagactggatatgccaatgtctttatcaag
aacctggacccagctattgataacaaggcattgtatgacattttcgttgccttcgggaat
gtactttcttgcaaggttgctactgatagaaatggacaagcaaaaggattcggctatgtt
cagtttgaaaatgatgaagccgcacagaatgcaatcaaaaggttaaatggtatgctaata
aatgataaacaagtttatgttggacgtcatgttcgacgacaagaacgggtgccagccaat
gtgacgccgaagttcactaatgtttatgtaaaaaatttgtcagaaacaacaagtgatgag
gaccttaagaaagtttttggaacttatggtaccatcaccagtgttgttgtcatgaaggac
cagaatggtaagtccagatgttttggttttgtgaactttcagagcccagatgcggctgcc
gctgctgtcgagaagttaaatgggatgaaaaatgatgacaagacgtggtatgtgggaagg
gctcaaaggaaagcagaaagggaagcagagttgaaagccaaatttgaacaggaaagaact
agtagatatgaaaaactacaagctgcaaatttgtatctgaaaaatctggatgacagcata
gatactgaaaaactgaaggagttattttcggagtttggaacaattacctcatgcatggtt
atgcttgatccacaaggagttagtaagggctctggttttgttgccttttctacacctgaa
gaagcttcgaaagctttgaatgcaatgaatggaaagatgattggaaagaagcctctgtat
gttgctgtcgctcaacgcaaagaagaaagaaaagctagattacagtcgtattttgctcaa
cttcgtacacaaggtgccatgtcacctttggcatcaggggttcctggatatcattctggt
cctcataggcttgatcttcagcagctatattatggtcaaggcagtcctggtctgttacac
cctcagcctgcaggatatggttaccagcagcaactcatacctggaatccgtcctggtgtc
actccaaattatattatgccatacaacctccaaagacaacgaggacaaccaggtcaaagg
atgggtgttcgtcgaggtggaaactcccaacaaatgctgcagcaacaggtgctgcaccgt
aataccaatgaaggtttgggatacatgggtaatgctagagatggtgtggatcaatctaca
gttacccaaagcgttgtaggccctatcctgccgttaccatatggtgtttcaaggatgcca
gtaaaccctgttgaagtgcaacgacctaacccagtgcacatatcgacactcatatctgct
ttagcttctgcttcccctagagaacgtaacaagatgttgggagaacaactttatccgctg
gtgcagggttttgagcctgaacatgcgggaaaggtgactgggatgttgctagagatggac
caaacagaggttctccatctcatcgagtctccagatgcttcgaaggagaaggtggctgag
gcaatggctgtccttcgggattctgcagcaggagaatctgatgcgagtaaggagttggtc
attggaactgactga
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