Gossypium hirsutum (upland cotton): 107901935
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Entry
107901935 CDS
T04793
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107901935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107901935
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107901935
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107901935
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107901935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
107901935
NCBI-ProteinID:
XP_016683608
UniProt:
A0A1U8J4N9
LinkDB
All DBs
Position
D06:complement(56292627..56298551)
Genome browser
AA seq
1024 aa
AA seq
DB search
MAISNELAQKQLPSISERFKALLKQREDELRVSGGVADDDGATPTTEEIVQLYEVVLSEL
TFNSKPIITDLTIIAGEQREHGEGIADAICARIIEVPVEQKLPSLYLLDSIVKNIGREYV
RYFSSRLPEVFCEAYRQVNPNLHPAMRHLFGTWSTVFPPSVLHKIEMQLQFSQTGNQQSS
GVTSLQSSESPRPTHGIHVNPKYLRQFEQQSGADSNTQHVRGMSAGQKLYGQKHTIAYDE
FDSDHTEVPSSHVGVQRLSSTGNVGCTSLAIGANKSQLSSASRVSRPFSPSRIGSDRLLS
SEVDDLPSDDSPRRFAEVASPSRPPVFDFGRGRGTIRDEETREWPRKHFYGDYRNCSEGS
LNSYKLSNGNERQTLRALIDAYGNDRGQGMSNSKPVQVERLDVNGMGNKVTPRSWQNTEE
EEFDWEDMSPTLADRRSNEFSVSSVATFGSIGARPAGLESNRSSRSNQTQLALDESSTIP
EDAVPSLSSGHGLNQIQRPRYPQDAWSNSYPFSQSSHQLHAKGRGRDFWMPFAASGISSL
GGDKNVPLIEKLPEGGSQFVRPPALVPRSGSSSLDTVTVVTQPAMLPLTAGAWPPVNVHK
SQPPNAHTNYSLQQHGRSHFDSLNPINAAMNQGQNKHPYMPEQFDNFESKEQSLKTVPQL
PGQRPALQQRNSLHGSLQPHFPPHEARDSFLSSATGPLPPRLLAPSMNHGYSPQMHGASI
SMVPSNLVPVAQPPLSIPNMPTGSLHLQGGAMPPLPPGPRPASQMMPAAQNAGPLLPNQP
QGGPFTGLISSLMAQGLISLTKPTPIQDSVGLEFDADLLKVRHESAISALYADLPRQCTT
CGLRFKFQEEHSTHMDWHVTRNRMSKNRKQKPSRKWFVSASMWLSGAEALGTDAVPGFLP
TEDIVEKKDDEELAVPADEDQNLCALCGEPFDDFYSDETEEWMYRGAVYMNAPNGSVEGI
DRSQLGPIVHAKCRSESSVVPPEDFVRYDGVCIFNFASRLHCHSNIIFNRPFMLFHHLIQ
FHSV
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atggccatatccaatgaactagcccaaaagcaactaccgtcgatatcggaacggttcaag
gctctattgaagcaacgggaagatgagctcagggtttccggtggtgttgctgatgatgat
ggggcaacgccgactacggaggagattgttcagctttacgaggttgtattatcggaacta
actttcaattcgaagcccataattactgatctcacgatcattgccggtgaacagcgagag
cacggcgaaggcattgccgatgctatttgcgcacgaattattgaggttccagtagagcaa
aaacttccttcgttatatctattagatagcattgtaaaaaatattggccgagaatatgtt
aggtatttctcttcccgtttgccagaggtattttgtgaggcatacaggcaagttaatcct
aacttgcatcctgcaatgcgacatctatttggcacatggtcaacagtttttccgccttcc
gtactacataaaatcgagatgcaactgcagttttctcaaacggggaaccaacaatcttct
ggagtaacttccttgcagtcttctgaatcacctcgtccaacacatggcatacatgttaat
cctaagtacttgcggcagtttgaacaacagtcaggtgcagatagtaatacgcagcatgta
agaggcatgtctgctggtcaaaaattgtatggtcaaaaacatacaattgcatatgatgaa
tttgattctgatcacactgaggttccatcctcacacgttggtgtgcaaagattgagctca
actggaaatgttggctgtacttctcttgcaattggggctaataaatcacaactttcttca
gcttccagagtttcaagacccttctcaccatcaaggattggatctgatagacttttatca
tcagaagttgatgatcttccatcagatgattctcctagaaggtttgcggaggtagcctct
ccatctcgtcctcctgtctttgattttggacgcggaagaggaaccatcagagatgaggaa
acaagggagtggccaaggaagcacttttatggcgattaccgtaattgttctgaaggttct
ttaaattcatacaagcttagtaatggaaatgagcgtcaaacactcagggctttaatagat
gcatatggtaatgatagaggacaaggaatgtctaacagcaagcctgtacaagttgagcgg
ctggatgtaaatggcatgggcaataaggtgactccaagatcatggcagaatactgaagag
gaagagtttgattgggaagatatgagcccgacattagcagaccgaaggagcaatgaattt
tcagtgtcatctgttgccacttttggaagcattggagcaaggcctgctggattagaatct
aataggagcagtcgctctaatcaaactcagctggcccttgatgaatcttcaacaattcct
gaagatgcagtcccttcactgagttctggtcatggattaaatcagattcaacgtccgcgt
tatcctcaggatgcttggagtaactcatatcctttttcccagtcatcacaccagcttcat
gccaaaggaagaggaagggatttctggatgccctttgcagctagtggtatatcctcgtta
ggtggtgacaaaaatgtccctcttattgagaaattgcctgagggtggttcacaatttgtt
aggcctccagcccttgttccaagatctggttcttctagccttgacactgttactgttgta
actcaaccggccatgttacctttgactgctggggcatggcctccagtaaatgttcataaa
tctcagccgccaaatgcgcacactaactattcactgcagcagcatggtaggagtcacttt
gattctttgaatcctatcaatgctgccatgaatcagggtcaaaacaaacatccatatatg
cctgaacaatttgataattttgaaagcaaggagcaaagtttgaaaacagtgccacaattg
cctggacaacgccctgcattgcaacagcgaaattcgttgcatggatctttgcagccacac
tttccccctcatgaggctcgagatagttttctttcatccgcaacaggacctttaccacca
cgcttattggcaccatccatgaatcatggctactctccccaaatgcatggtgccagcatc
agtatggtcccatctaatctagtacctgttgcacaacctcctttatcaatcccaaatatg
cctactggctcattgcatttgcaggggggagccatgccacctctcccccctggtcctcgt
ccggcatctcaaatgatgcctgccgcccaaaatgctggtccattgctccctaaccaaccg
cagggcggtccattcactggtttgattagttccctcatggctcaaggtttgatttcattg
acaaaaccaactccaatacaggattctgtgggacttgagtttgatgcagacctcctcaag
gtgcgacatgagtctgctataagtgctttatatgctgatcttccaaggcagtgcacaaca
tgtggccttcggttcaagttccaagaggagcatagtactcatatggattggcatgtgaca
agaaaccggatgtctaagaaccgtaagcagaaaccttctcggaagtggtttgtaagtgct
agtatgtggcttagtggtgcggaagctctgggaactgatgcagttcctgggtttttaccc
actgaggacattgtagaaaagaaagatgatgaagaattggcagttcctgctgatgaagat
cagaacttatgtgcattatgtggtgaacccttcgatgatttttatagtgatgaaacagag
gagtggatgtataggggggctgtctacatgaatgcacccaatgggtcagttgaaggcatt
gatagatcgcagttaggtcccatagtgcatgctaaatgcaggtcagagtctagtgtggtt
ccccctgaagattttgtacggtatgatggggtatgtatttttaattttgcctccagattg
cattgccattccaatattatctttaatagaccattcatgttatttcatcatcttattcaa
ttccattcagtctga
DBGET
integrated database retrieval system
