Gossypium hirsutum (upland cotton): 107908438
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Entry
107908438 CDS
T04793
Name
(RefSeq) nuclear exosome regulator NRDE2 isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107908438
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107908438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
TPR_19
Motif
Other DBs
NCBI-GeneID:
107908438
NCBI-ProteinID:
XP_016691094
UniProt:
A0A1U8JS35
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Position
D02:40930737..40953477
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AA seq
1157 aa
AA seq
DB search
MDGNGDAVDDQPLNPSLFPLFPAAASTVTSTSSIPQWLSNPSFTTDLSLINDAVYSLPRS
LDDVQEEDAQEEEENEAKRQEQEKLPHSYELLEEEEEEQEEEEDSDGDKYGERKRKKRSK
RRNKKKKISKEIGDSKSKSIHSNDYYFDSHPDHDNLAYGSLYRMDVPRYKLKNPEQLSGY
MSQGFYGLTHRFSTYDKDADIDALDTKLKSSGRYWSPNNAALEHHKNLKRLRRYPPKNSS
HAVPADFIPLSDIESSPHRGDESSISNNSVIEESWEDEVLRRTREFNKLTREHPHDEKAW
VDFAEFQDKVASMQRQKGVRLQTLEKKISILEKATELNPDNEQILLFLMRAYQKRDNTDV
LIGRWENVLMQHSGSYVLWREFLHVVQGEFSRFKVSDMRKMYAHAIQALSAACNKQFRQI
HQTSKPTDSAMVHLELGLVDIFLSLCRLEWQTGHQELATALFQAEIEFSLFCPSLSLNEP
SKQRLFKHFWDSDGARVGEEGALGWSVWLEKEEENRQRVMKEESSDKTDEGGWTGWSEPL
SKCKESSTSLENVSHDDAAVEDFHEKIENEDIKQEDDTESLLKQLGIDVDAGVDGEVKDT
LTWARWSEEESSRDSAQWMPVRAKSGAVTNFYEEPNEEVDEQFMREILYEDVCEYLFSLS
STEARLSLVFQFIDFYGGKISSWVCTNSSSWTEKILSLEELPDCIWQNMRRLQDELNKSQ
SMSGEFCFEFLFDGARGIPQRTEMMKFLRNAALLCLTAFPRNHILEEAALLAEELFVTRM
NSSSCSGAPCQSLAKRLLKRDRQDLLLCGIYARREAFYGNMDNARRVFDMALLSLAGVSL
GLQSNSSLLYLWYAEAELGNSNGSKSDSLSRAMHILSCLGSSATYGPFNSHPSSLQLLRA
RQGFKEKINSLRSKWVRGFIDDQSVALVCAAALFEDLAAGWAAGIEIIDDVFTMVLPERR
SQSHHLEYLLNYYVRILQRHREQFTLSKAWDAVTHGLQIYPSSPELFKALVEISCLYTTP
NKLRWMFDEHCHKKPSVVVWLFALIFEISRSGSLHRIHGLFERALANDKFHNSVILWRLY
VAYEINVVHNPSAARRIFFRAIHACPWSKKLWLDGFLKLNSILTAKELSDLQEVMREKEL
NLRTDIYEILLQDEILS
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggatggaaatggcgacgcagtggacgaccaacccctaaatccctctctatttcctctc
tttcctgctgccgcttctacagttactagtactagcagcatccctcaatggctttccaac
cctagcttcaccaccgacctttccctcatcaacgacgccgtttactcccttccccgctcc
ctcgacgacgtacaagaagaagatgcccaagaggaagaagaaaacgaagccaagcgacag
gagcaggagaagctcccccattcttacgagctacttgaggaggaggaagaagaacaagaa
gaagaagaagattctgatggagacaagtacggcgagagaaaaaggaagaagagaagtaag
aggagaaacaagaagaaaaagatttcgaaagaaatcggtgattccaaatccaaatccatt
cattccaatgattattattttgattctcatccagatcatgataacttggcctacggctct
ctctacaggatggatgttccacgctataaacttaaaaatcctgaacaattatctggatat
atgtcccaaggtttttatggtctgactcacaggttttcaacatatgataaggatgctgat
attgatgctttggataccaagctaaagtcttctggtcgatactggtctcccaacaatgct
gcactcgaacatcataagaacttaaagcgacttcgtcgttaccccccaaaaaattcttca
cacgcagttcctgctgatttcattcctttatctgatattgaatcatcacctcatcgtggt
gatgaaagttcaatctcaaacaattctgtcattgaagaatcttgggaggatgaagtgcta
cgtagaacaagggagttcaacaaattgaccagggagcatccccatgacgaaaaagcatgg
gtagactttgcagagttccaggacaaggttgcaagtatgcaacgacagaaaggtgttcgc
ttacagactcttgaaaagaagattagcatacttgagaaggcaactgagcttaatcccgat
aacgaacaaatcttgctttttctaatgagggcttatcagaaaagggataacactgatgtg
ctaattgggagatgggaaaacgtgcttatgcagcattcggggagttatgtgttgtggaga
gaattcttgcatgttgttcaaggggagttctccagatttaaagtttcagatatgagaaaa
atgtatgcacatgcgatccaagctctgtctgctgcctgcaataagcagtttagacagatt
catcaaactagtaaacccacggatagtgctatggtccatcttgagcttggtctggttgat
atatttctctctctttgtaggcttgagtggcagactggtcaccaggaattggccactgct
ttatttcaagctgaaattgaatttagtttgttttgtccttctctatcgttgaatgagcct
agtaaacagagactgtttaagcacttctgggatagtgacggtgcaagagttggagaagaa
ggggctcttggttggtccgtatggttggaaaaggaagaagaaaatagacagagagttatg
aaagaagagagttcagataagactgatgagggtggttggactggttggtcagaaccatta
tccaaatgtaaggaatctagcacaagtcttgaaaatgtttcccatgatgatgcagcagtt
gaggatttccatgagaaaattgagaatgaagatattaagcaagaagatgatacagaatca
ttgctaaaacaactaggaattgatgttgatgctggggttgatggcgaggttaaagacact
ttgacatgggctaggtggtcagaagaagagtcctcaagagactctgctcaatggatgcct
gttcgtgcaaaatctggtgcagtcactaatttttatgaggaacctaatgaagaagtggat
gagcaatttatgagagagatattatatgaagatgtatgcgaatacttgttctcattgagc
tcgactgaggctcgcttatctctagtattccagttcattgacttttatggtgggaaaata
tcctcttgggtttgtaccaacagttccagttggaccgagaaaattcttagcctggaggag
ttaccagattgtatttggcaaaatatgagaagactgcaggatgagttaaacaaatcacag
agtatgtctggtgaattctgttttgaattccttttcgatggtgccagaggcatccctcag
aggactgaaatgatgaaatttcttcgtaatgctgcgttactttgtttaactgctttcccc
cgtaaccatatattggaagaagctgctctcttggcggaagagctctttgtgacaagaatg
aactcttctagctgttcaggtgctccgtgtcaatctttggcgaagcgccttctaaaacgt
gatcggcaggatctcttgctttgtggaatttatgcacgtagagaggctttttatgggaat
atggataatgccagaagagtgtttgacatggcattgctgtcacttgctggggtttcattg
ggtctacagtctaattcttctcttctatatttatggtatgctgaggctgagcttggaaac
agtaatgggagtaaatcagattcattgtcacgtgcaatgcatattctctcttgcctagga
agtagtgcgacatatggtccattcaactctcatccatcaagcttgcaactactgagagca
cggcaagggtttaaagaaaaaataaactcattaagatcaaaatgggtgcgaggttttatt
gatgatcagtcagttgccctagtttgtgcggcggctttgtttgaagacttggctgctgga
tgggctgctggtattgaaattatagatgatgtttttacaatggtgctcccagaaagaaga
agccaaagtcaccatctagaatatctattaaactattatgttaggatacttcaaagacat
cgtgagcaatttactttgtccaaagcttgggacgctgtcacacacgggctgcaaatatat
ccatcaagcccagagctctttaaagctttggtggagatcagctgtctttacacaactcct
aataaattacggtggatgtttgatgagcactgtcacaagaaaccatcagtagttgtttgg
ctttttgctttaatatttgagataagtcggagtggctcgctgcataggatccatggattg
tttgagagggcactagcaaacgataaatttcataattcagttatactctggcgattgtat
gtcgcatatgagattaacgttgttcacaatccatctgcagcgaggcgaatattttttcgt
gctattcatgcctgtccatggtcaaaaaagctttggctagatggttttctcaaattgaac
tccatcttaaccgcaaaagagctgtcagatcttcaagaagtaatgagggaaaaggagttg
aatttaaggacagatatttatgaaattcttttacaagatgagatactgtcatga
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integrated database retrieval system
