Gossypium hirsutum (upland cotton): 107908559
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Entry
107908559 CDS
T04793
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107908559
03015 mRNA surveillance pathway
107908559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107908559
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107908559
mRNA cycle factors
P-body specific factors
107908559
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
TMEM156
Motif
Other DBs
NCBI-GeneID:
107908559
NCBI-ProteinID:
XP_016691247
UniProt:
A0A1U8JLU4
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Position
D02:complement(71964499..71970255)
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AA seq
508 aa
AA seq
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MKRTLDRTKVVLRHLPPSITEAMLIEQVDSAFAGRYNWFSFRPGKNGQKHQSCSRLYIDF
KSPEDVLEFAEFFNGHVFVNEKGAQFKTIVEYAPSQCVPTLWAKNDDCEGNIFKDPEYLE
FLEFLAKPVENLPSAEIQLERREAERVGALKDSSIVTPLMDFVRQKRAAKVGSRKSLSNG
KLSRRAGGQSGGIPSSASSKRGSEKRRGSTTMYVLRDSLKNASGKDKSKYILVSRRDEQQ
LSNRPVILASSVGTEVSEEESGATRITDADKNKVLLLKGKGKEKEISHVAGSILHQQNFT
SPIKTILRSTPTKLNSRRENRIIRGILLNKDSRQSQCAGFQSEQHIETSHLEKERRPTWH
PHANLGLKDACNASDGNVAGNHLHGAKKLERRSRNKDRTDHGVWTLRHSDGSCASDESLS
SSASQSAQILIDSSEGACGDNKVDFSSVGSWQGKTFASEHNGSSKHVSRRVAVANGSSAV
NDGKPGKRANVYGSHEKQVWVQKSSSGS
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggactttggatcgaaccaaagtggttctccgccacttgccaccgtccattacg
gaggccatgcttatcgaacaagtcgatagtgcctttgctggccgttacaactggttttcc
ttccgtccaggaaagaacggtcagaagcatcagtcttgttccagactgtacatagacttc
aagagccctgaggatgtcttggagtttgcagagttctttaacggtcatgtgtttgttaat
gagaaaggggcacagtttaaaactattgttgagtatgcaccttcccaatgcgttcccacg
ctctgggctaaaaatgatgattgtgaagggaatatattcaaagatcctgagtatttggag
ttccttgaatttcttgcgaagccagtcgagaatcttcctagtgcagagatacaattagag
aggagggaggcagaaagagttggtgcactgaaggattcttccatagttacacctttaatg
gattttgttagacagaaaagagctgctaaggttggatcacggaagtcactgtctaatggg
aaacttagcagaagagctggtggacaatctggtgggattcctagttcagcatcatcaaaa
agaggttctgaaaagaggcggggttctactacaatgtatgttctaagggatagcttgaaa
aatgcaagtggcaaagacaaatcgaaatacattctggtttctagaagggatgagcagcaa
ctttccaataggcctgttattttggcatcatctgtgggaactgaagtatctgaagaggaa
agtggagctactagaattactgatgctgataaaaataaagttctgcttctgaaagggaaa
gggaaagagaaagaaatttctcatgtggctggaagtatattgcatcaacagaattttaca
tctccaattaaaacaatacttcgttcaactcctaccaaactgaactcacgacgcgaaaac
agaataatcagaggcatactgttaaacaaggattctcgtcaaagtcagtgtgccggcttc
cagtcagagcagcatattgagacctcacatttggaaaaagagagacggcctacttggcat
ccacatgcaaatttaggtttgaaggatgcatgcaatgcttcagatggtaacgttgctggg
aatcacttgcatggtgctaagaagctagaaagacgtagcagaaacaaagatagaacagat
catggtgtttggacccttcgccattctgatggatcatgtgctagtgatgagtccttgtca
tcatctgcttctcaatctgcgcagatacttatagattcttcagaaggggcttgtggtgat
aataaagttgatttctcaagtgttgggagctggcaaggtaaaacttttgcaagtgaacat
aatggatccagtaagcacgtcagccgtcgtgtagcagttgccaatggatcatctgctgtg
aatgatgggaaaccagggaaaagagccaatgtgtatggttctcatgagaaacaagtatgg
gtacagaaatctagttctggttcttag
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