Gossypium hirsutum (upland cotton): 107912858
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Entry
107912858 CDS
T04793
Name
(RefSeq) ATP-dependent DNA helicase Q-like 3 isoform X1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107912858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ghi03032
]
107912858
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107912858
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
107912858
DNA replication proteins [BR:
ghi03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
107912858
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
107912858
Bloom's syndrome complex (BTR)
107912858
FA (Fanconi anemia) pathway
107912858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3276
Motif
Other DBs
NCBI-GeneID:
107912858
NCBI-ProteinID:
XP_016696700
UniProt:
A0A1U8K2C8
LinkDB
All DBs
Position
D11:20011946..20023228
Genome browser
AA seq
733 aa
AA seq
DB search
MKKSPLPVQNLGAKGKQRKCGREALVKLLRWNFGHPDFRGNQLEAIEAILSGRDCFCLMP
TGGGKSMCYQIPALAKTGIVLVISPLIALMENQVMALKEKGIAAEFLSSTQTSQLRNKIH
EDLDRGQPSIRLLYVTPELIATSGFMSKLKKIHGRGLLNLIAVDEAHCISSWGHNFRPSY
RKLSSLRNQLQDVPILALTATAIPKVQKDVIDSLNLQNPLVLKSSFNRPNIYYEVRYKDL
MDDAYADLCDVLKSAGDVCAIVYCLERTTCDDLSTHLSKNGISCAAYHAGLNNKLRSSVL
DDWICSKIQVVVATVAFGMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRSLLY
YGVDDRKRMEFILSIAESKKLQSSDSQHGLSKKSTSDFNLMVEYCEGSGCRRKKILESFG
EEVSASLCKKSCDACKHPNLVAKYLEELTTAIAVRQRNGFSKILSSSTDAFENENFSEFW
KRNDEASGSEEDISDSEDGFEVAKGISRSKFSKKTGINEKIELLQRAEENYYRNKAHDKQ
ANKPDKNAISGALRESSKQRLLDALKQAHQRLGDLKVDFEASSTILENECFKKYGKSGKS
FYYSQVASKVRWLSTTSSAAEITNQIGTGITSPLENITRKEEPSPRTVSAMLHDERKKEV
NKVIGEQRCGDIESKTSVKASTPQMQTKLPAIPSFSQFVNSRKSKEMQQPKASEEKEHHH
SPNKHTKKRMRLK
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagtcgccgttgccagtgcaaaaccttggcgccaaaggcaagcaacgcaaatgt
ggaagagaagctttagttaagctcctgagatggaatttcggtcatcctgatttcagaggg
aatcagttggaagccattgaggccattttatcagggagagattgtttttgtctaatgccg
actgggggaggaaaatcaatgtgttaccaaatccctgctttggctaaaacgggaattgtg
ctcgtcatttctccgttaatagccttgatggaaaaccaagtaatggcattgaaggagaaa
ggaattgcagctgagtttctctcttcaactcaaacgtcgcagctgaggaataagattcat
gaagatcttgatcgtggacaaccatctattcgcttgctttatgtgacaccggagctgatt
gccacttcagggtttatgtcaaagcttaaaaagattcatggtagaggattgttaaatctc
attgctgtagatgaggcacattgcatctcatcatggggtcataatttcaggcctagctat
cgcaagctttcatctttgaggaaccaactacaagatgtaccaatattggctttgactgcc
actgctattcctaaagtacagaaggatgtcatagattccttaaatttgcaaaatccttta
gtccttaaatcatctttcaaccgtccaaatatatattatgaagttcgatataaagatctt
atggatgatgcttatgctgacttgtgtgatgtgctcaaatctgctggagatgtctgtgca
attgtttactgccttgaacggacaacttgtgatgacttgtccactcatctttccaaaaat
gggatttcctgtgctgcctatcatgcagggttaaataataaactgcggagctctgtctta
gatgattggatttgttccaagatacaggttgttgtggccacagtagcttttggaatgggt
atagacagaaaggatgttagaatagtttgccattttaatatcccgaagtcaatggaagcc
ttctatcaagagtcgggtagagctggtcgtgaccagttgccttctagaagcttgttgtac
tatggagtggatgatcgaaaaaggatggaatttattcttagcattgctgagagcaagaaa
ttgcaatcatcagattcacaacatggattgtcaaagaagtccacgtctgattttaatctg
atggttgaatattgcgagggttctggatgccgtaggaagaagattcttgagagctttgga
gaagaggtttctgcatcactgtgtaaaaaatcatgcgatgcctgcaaacatccaaacctt
gtggccaagtatctggaagagctaacaactgcaattgctgtccgccaaagaaatggtttc
tcaaaaatcttgagcagctccacggatgcctttgaaaatgaaaatttctcagaattctgg
aaacgtaatgatgaggcaagtggctctgaggaagatatatctgattcggaggatgggttt
gaggttgcaaagggcatatccagatccaaattttcaaaaaaaacagggataaatgagaag
atcgagctcttgcagcgtgcagaagaaaactactatcggaacaaagctcacgataaacaa
gccaataaacctgacaaaaatgccatatctggagcgctgagagaatcaagcaagcaaaga
ttgttagatgccctgaagcaggctcatcagcgacttggtgacttgaaggttgattttgaa
gcatcatctaccatccttgaaaatgagtgctttaagaaatatgggaagagtgggaaatct
ttttattactcgcaagtggcgagtaaggtgaggtggctatctacaacaagctctgcagct
gagataacaaatcaaatcggtactggtatcacgtctcctttggagaatatcacaaggaag
gaagaaccctctcctcgaacagtgtcagctatgttacatgatgagagaaaaaaagaagta
aataaagttattggtgaacaacgttgtggcgacattgaatcgaagacttcagtaaaggct
tcaaccccgcagatgcaaactaagctgcctgcaattccatctttctctcagtttgtaaac
agcagaaagtcgaaagagatgcaacaaccaaaggcatcagaggaaaaggagcatcaccat
tcacccaataaacatacgaagaagagaatgaggttgaagtag
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