Gossypium hirsutum (upland cotton): 107919919
Help
Entry
107919919 CDS
T04793
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107919919
03015 mRNA surveillance pathway
107919919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107919919
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107919919
5.6.2.5 RNA 5'-3' helicase
107919919
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107919919
mRNA cycle factors
Common to processing body (P body) and stress granule
107919919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
nSTAND3
Viral_helicase1
PhoH
AAA_16
SRP54
ATPase
AAA_22
AAA_32
AAA
AAA_25
Motif
Other DBs
NCBI-GeneID:
107919919
NCBI-ProteinID:
XP_016704850
UniProt:
A0A1U8KQY7
LinkDB
All DBs
Position
A08:112944180..112954550
Genome browser
AA seq
1260 aa
AA seq
DB search
MDSQFETASQPDPATDAYTFLEFNTQGESDFEYTDFRDPIRSWPTPSDAHSAERSGSDHH
SDTAASSSPSSASKGAGRGVASNNNSHSNSISNSAAVVDALATGIGGLNFEETVGDEDGG
YDYGKGDFAEHSCRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRSKHKEV
CLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLSQ
WCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDE
PQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVFP
KEDNELRLVPGDELRLRYSGDAAHPAWQAVGHVIKLTAQEEVALELRASQGVPIDVNHGF
SVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLP
ELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ
LAEKISTTGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGEL
SSSDEKKYKALKRATEREISQSADVICCTCVGAADPRLANFRFRQVLIDESTQATEPECL
IPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPC
LSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNR
TEAANVEKIVTILRVFSCQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQ
GREKDYIIVSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLT
HYKENECLVEGPLNNLKQSMVQFQKPKKIYNERRLFFGGGPGILPNDNFGDASSSPNVDR
RSSRARGTYMPSGPPNGTHKPGVHPTGFPMPRVPLPPFPGSPSQPYAIPSRGAVHGPVGA
VPQVPQPGSRGFGVGRGNASAPIGHHLPHQQGSQQNVGTIGSPFNFPPLENPNSQPSVGG
PLSQPGFVNNMPVQGASQTIRDGFSMGGMSQDFLGEDFKSQGSHVPYNIADFSTQGGYAV
DYASQGAQSGFPGNFLNQNSQAGYSRFGAGNDFMTQDYMNHGSQGLFTQAGFNDPSQDDA
SQSHFGAANPNQLQSQGLMNSLYSQPFAHYNTQPLNLQSPQQQQPQQGQGSQNQNLRYNG
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaattcgagacggcctcgcaacctgacccagccaccgacgcttacaccttc
ctcgaattcaacacccaaggtgagtccgatttcgagtacacggacttccgtgatccgatt
cgttcatggccgacaccctccgacgcccactccgccgaacgatccggctccgaccaccac
tcggacactgctgcttcctcttctccctctagcgcttcgaaaggcgctggccgtggcgta
gcgagcaataacaacagccatagcaatagtattagcaatagtgcggccgtggtcgatgcg
ttagccacggggatcggtggattgaattttgaggagacagtcggggatgaggatggcggg
tatgactacggaaaaggagatttcgccgagcactcttgtcggtattgtggggtttcaaac
ccggcttgcgtggttcgctgtaatgtcccttcgtgtaggaagtggttttgtaattcaaga
gggaatacatccggctcgcatattgttaatcatctcgtgagatccaaacacaaggaagtc
tgccttcataaggatagtcctttgggagaaacaattcttgaatgctacaactgtggatgc
agaaatgtttttcttcttggttttatatctgctaagacagagagtgttgtcgttcttctt
tgtagagaaccttgtttgaatgtcaatgctttgaaggacatgaattgggatttgagtcag
tggtgtccccttattgatgataggtgctttctgcagtggttggttaagatcccttctgaa
caagaacagttaagggctcgacaaataagtgctcaacaaataaacaaggtggaagagctt
tggaagacaaatcccgatgcctcctttgaagatcttgagaagcctggtgtagatgatgaa
cctcagcctgtggcattgaagtatgaagatgcttatcagtatcaaaatgttttcgcacca
cttattaagcttgaagctgactatgataaaatgatgaaagaatctcaaagcaaggacaat
gtcacagttcgttgggatatcgggctaaacaagaaacgaattgcatattttgtctttcca
aaggaagacaatgaactccgtctggtacctggtgatgagttgcgactgcgttattcagga
gatgctgcacatccagcgtggcaggctgttgggcatgtgatcaagctaacggcgcaagag
gaggttgcacttgagcttcgtgctagtcagggagttcctattgatgtgaaccatgggttt
agcgttgattttgtatggaaaagtacaagttttgaccgaatgcagggggcaatgaaaaca
tttgcagttgatgaaacaagtgttagtggatatatttaccatcaccttctcggccatgaa
gttgaggttcagatggttcgtaatacactgcctcgtcgttttggtgcacctggtctgcca
gaattgaatgcatctcaagtttttgcagtgaagagtgttcttcagaagcctataagcttg
attcaaggcccccctggcacaggaaaaactgtgacttctgccgccattgtctatcacatg
gccaaacaggggcaggggcaggttctggtctgtgctccaagtaatgtggctgtcgatcag
ctagctgaaaagataagcacaactgggttaaaggttgtaaggctttgtgcaaagtctaga
gaagctgtcagttctcctgttgaacatttgaccttgcattatcaggtccgacatcttgat
acatctgagaagagtgaacttcataagttacaacaattgaaagatgaacaaggtgagttg
tcaagcagtgatgagaaaaagtacaaagcattgaagcgagcaacagagagggaaatatca
caaagtgctgatgtcatttgttgcacttgtgttggggctgcagatcccagacttgccaat
tttaggttccgccaggtacttattgatgagtctactcaggcaacagaacctgagtgtctc
attcctttagttcttggagtgaagcaggttgtccttgttggtgatcattgccaacttggt
cctgttataatgtgcaagaaagcagctcgtgctgggctggcgcaatctctttttgaacgt
ctagttttacttggtgttaaacctattagattgcaggttcaataccgtatgcacccatgt
ttgtcagagtttccttctaacagtttctatgaaggcacattgcaaaatggagtgacaatc
aatgaaaggcaatcatcaggcattgatttcccttggcctgtgcctaatcgtcccatgttt
ttctatgtacagatgggacaagaggagattagtgctagtggaacatcatatctcaatcga
actgaggctgcaaatgttgaaaagatagttaccatcttgagagtgttttcctgtcagatt
ggggtcataacaccttatgagggacaacgggcatatattgtgaactatatgtcaagaaat
ggttctttgaggcagcagctttacaaggaaattgaggttgcaagtgttgactcattccaa
ggacgggaaaaggattacatcattgtttcttgtgtgagaagtaatgaacatcagggtatt
ggctttctaaatgaccctcgaaggcttaatgtcgccctaacacgtgctcgatatggtatt
gtaattcttggaaaccctaaagttcttagcaaacagcctctgtggaatggtttattgaca
cattacaaggaaaatgagtgtctggttgaaggacccctcaataacttgaagcagagtatg
gttcaattccaaaagcccaaaaagatctacaatgaacggaggctgttctttggtggtgga
cctggcattctacctaatgataattttggggatgcctcatctagtccaaacgttgataga
agaagcagccgtgcccggggtacttatatgccttctggtccacccaatggtacacataag
cctggagtgcatcctactgggttcccaatgccccgggttcctcttccaccatttccgggc
tctccttctcagccttatgctattccatcccgtggagctgtacatggaccagtgggagct
gttcctcaagtccctcaaccaggaagtcgaggctttggggttggtcggggtaacgctagt
gctcctattggccatcatctcccacatcagcaaggctcacagcaaaatgtcggtactatc
ggatctccctttaacttccctcctctggagaacccaaatagccagccatctgtaggtggt
ccgttatctcaacctggatttgttaacaatatgcccgtccaaggggcaagccagacaatt
cgtgatggattttcaatgggaggaatgtcccaggacttcttgggtgaggacttcaaaagc
caaggctcacatgttccttataacattgctgatttttcaacacagggtggctatgcggtt
gattatgcttcacaaggagctcagagtgggtttccagggaacttcctaaaccagaattct
caagctgggtattctcgttttggtgctggaaatgatttcatgactcaggactacatgaat
catggatcacaaggcctgtttactcaggctggctttaatgatccttcacaagatgatgca
tcacagagccactttggtgcggctaatcccaaccagcttcagtctcagggtttgatgaac
tctctctactcccagccctttgcacactacaacacacagccactaaacttgcagtctcct
caacagcagcaaccacagcagggccagggttcccaaaaccagaatcttcgctataatggt
taa
DBGET
integrated database retrieval system