Gossypium hirsutum (upland cotton): 107925472
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Entry
107925472 CDS
T04793
Name
(RefSeq) serine/arginine-rich splicing factor SR34A
KO
K12890
serine/arginine-rich splicing factor 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107925472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107925472
Spliceosome [BR:
ghi03041
]
Common components
Common spliceosomal components
SR proteins
107925472
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_occluded
Smg4_UPF3
RRM_3
Motif
Other DBs
NCBI-GeneID:
107925472
NCBI-ProteinID:
XP_016711668
UniProt:
A0A1U8LE65
LinkDB
All DBs
Position
A01:109598427..109603487
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AA seq
232 aa
AA seq
DB search
MASRSSRTIYVGNLPLDVKEWEIEDLFYKYGHILDIELKLPSRPPGFCFVEFEDPLDAED
AIRGRDGYNFDGCRIRVELAHGGRGQSSRHDYGGGSSRGGRGRFSVSHRSEFRVVVRGLP
SSASWQDLKDHMRKAGDVCFTEVHQDGDGAMGIVDYTNYDDMKYAIRKLDDSEFRNPFAR
AYIRVNCYEAGPRRGRSQSRSHIKSPRGNQRSVSKSRSPSPARLSRSRSRSN
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtcgttcttcccgcactatatatgttggtaacctaccgctggatgtcaaagag
tgggagattgaagacctgttctacaagtatgggcacattttggatatagaattgaagctt
ccttcccgtcctcctggtttctgttttgtggagtttgaggaccctttggatgctgaagat
gcaattaggggtcgagatggctataattttgatgggtgtcgtatcagggttgaacttgcc
catggtggtagagggcaatcttctcgacatgattatggtgggggcagcagcagaggtggt
agaggacgatttagtgtttctcatcggtctgagtttcgagttgttgttcgtgggctgcct
tcttctgcttcatggcaagatctaaaggatcacatgcgtaaggctggagatgtatgcttt
actgaagtccatcaagatggtgatggagccatgggtattgtggactacacaaattatgat
gacatgaaatatgcaatcaggaaactagatgattctgaatttcgaaatccttttgctagg
gcttatatcagggtgaactgctatgaggccggtcctcgcaggggtcgaagccagagtaga
agtcacattaagagtccaagggggaatcaaaggtctgtatcaaaatcgaggtcaccttca
cctgccagattatccagatcaaggtcaaggtccaactaa
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