Gossypium hirsutum (upland cotton): 107934350
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Entry
107934350 CDS
T04793
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107934350
03015 mRNA surveillance pathway
107934350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107934350
03041 Spliceosome [BR:
ghi03041
]
107934350
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107934350
Spliceosome [BR:
ghi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
107934350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
107934350
NCBI-ProteinID:
XP_016722288
UniProt:
A0A1U8M9J9
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Position
D13:complement(64392065..64396803)
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AA seq
863 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELEHLVDMTKVKMDVIRPWIATRVTELL
GFEDEVLINFIYGLLDGKEVNGKQVQISLTGFMEKNTGKFMKELWSLLLSAQRNASGVPQ
QFLDAKEEETRKKKAESDRIANEIQKKKDKESRENEQDRLRKMDDGDEIKAGDTELDPSS
KNMPPTKGSHARPEDERDADQRNGVGRNRSRSQSVSRSFSNSRSYSDGKQKFRSVSRSSE
SRRCSVSSDRMHPSPRRRSSTPRSRHSPSFSRSPVRRRPSYYRRRSPERRRPSYSRRRSQ
SRSPYRRGSPTPVRRRSRSPYRRRSPTPVHCRSRSPIRRYRSPSPITRRRSPLSIRRRRS
PSLVRRRRSPSPMLHGSRSPVRRRSPSPIRRKSPLPVRRRSPSPLRRRSPPPMRRRSPSP
VQQRHRRSSSPRRRRSPPSSRRSVTPSRGKSPSPYQSSSMSPVQRRSSSPVRRSPKGQRS
PSLSPGGQQMRRNLSPVGHNHSSMRSTRIDRMDQSDTDDKVPGLSPPPNKSPLSKSPSHV
RHRSGSEDRRLSSPYGSSPRQRKARIARDDSFSPEQKPRELKGHRDGQGTGRRNETSESR
HSPLISRQRVSPRTVHTPERLAGSRSIDSRSRLDNVESRKKDLETKSKRSSGEGVHSGTD
RQRSPAISEDSFQGEKQSRSRLREGKRSDERSCSHKNTKDSDEHHKLETSPVLLEKVDYS
NRGSDSDSKGSDKRRTKHKDGKRKHKRSERRKVTSDDDDSSYDSEIDDRKEAKRRKKEEK
RLRKEEKRKRSEERRRKREARRAEKLKTKRHDDDSSSDGEHAGTGKSCPGDDEEEAETEQ
KKLEIELRKKALESLKAKKGISH
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggatttttccggggtacttcggccgatcaagatactcggttctctaataag
caggcgaagctactgaaatcgcagaaatttgctcccgaattggagcatctggttgatatg
acaaaggttaagatggatgttattagaccttggattgctactagggtaactgagcttctt
ggttttgaagatgaagttcttattaacttcatttacggtcttcttgatgggaaggaagtt
aatggcaagcaagttcagatatccctcactggattcatggagaagaatactgggaagttt
atgaaagagctttggtctcttctacttagtgcacaaaggaatgcaagtggtgttccccaa
cagttcttggatgccaaagaagaagaaactaggaagaaaaaggcagagtcggatcggatt
gcgaacgagattcagaagaaaaaagacaaggaaagtagagaaaatgaacaagatagattg
aggaaaatggacgatggggatgaaatcaaggctggtgatacagagttggatccgtcctca
aagaatatgccgccaacaaagggttcacatgcacgccccgaggatgagagagatgctgac
caaaggaatggtgttggaaggaatagatcgcgttctcaatcagtcagcagatcgttttct
aattcgagaagctattcagatggcaaacagaagtttaggagtgtatctagatcatctgaa
tcacggcgatgctccgtttcctctgataggatgcatccatctcctagaaggcgatcttca
actcctcgatctaggcattcaccttccttttcacgctctcctgtaagacgaagaccatct
tattacaggcgaaggtctcctgaaagacgaagaccatcttactctaggcgtagatctcag
tctcgttctccttatcggcgcgggtcacctacacctgtgcgccgtagatctcgttctcct
tatcggcgcaggtcacctacacctgtgcactgtagatctcgttcacccatccgacgttat
agatcaccatcacctattacacgtcgtagatcaccattgtccattcgacgtcgcagatca
ccatctcttgtacggcgtcgtaggtctccctcacctatgctccatggatctcgttcccct
gtgcgtcgcagatctccttcacctatacgtcgtaaatccccattgcctgtgcgccgtagg
tctccatcacctcttcgacgaagatcaccacctcccatgcgacgtagatcaccttctcct
gtgcaacagcgacaccgcagatcttcatccccacggcgacgtagatcacccccttccagc
cgtaggtcagtaactccttcccgtggtaagtctccgtcaccttatcaatcaagttctatg
tctcctgtgcaacgtagatcttcttcaccagttaggaggtctccaaagggacaaagatca
ccttctctttctccaggaggacagcaaatgcgtcggaatttgtctccagtgggacataac
cactctagtatgaggtccacacgtatagatcgtatggatcagagtgatacagatgataaa
gtgcctggtttatcaccacccccgaataagtctcctctctccaaatccccatcacatgtg
aggcaccgatctggaagtgaagataggaggttgtcaagtccatatggaagttccccgagg
cagaggaaggcccgaattgctcgtgatgatagctttagtcctgaacagaaaccaagagaa
ttgaaaggtcatcgggacggtcaaggaacggggagaagaaatgaaaccagtgaaagcagg
cattcaccgctgatcagtaggcaaagggtttctcctaggacggttcatactcctgaacga
ttggcaggcagtcggtctatagactctcggagtcggcttgataacgttgaatcgagaaag
aaagaccttgaaacaaagagcaaaaggtcttccggagaaggtgttcattcaggaactgac
cgacagcgatcaccagcaatatcggaggactcgtttcaaggtgagaagcaaagtagatca
cgcttgagagaaggaaaaagatctgacgaaagaagttgttcccataaaaacacaaaggac
agtgatgaacaccacaaactagaaacttcacctgtgttgcttgaaaaggttgattatagt
aaccgtggttctgattcagattccaagggaagtgataagcgcagaactaagcacaaggat
ggtaagagaaagcataaacggtccgagaggcgtaaagtcacttcagacgacgatgattct
agttatgattccgaaatcgatgacaggaaagaagctaagaggaggaaaaaggaagaaaag
agattaagaaaggaagaaaaacgtaaacgtagcgaggaacggcgtcgcaaaagagaagca
cggcgtgcagagaagctcaaaacaaaacgtcacgacgatgattctagttcagatggagag
catgcaggaactggaaagtcttgtccaggtgatgacgaggaggaggcagaaactgaacag
aagaagcttgagatcgagttgaggaagaaggctcttgaatcgctcaaagcaaagaagggt
atcagtcactga
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