Gossypium hirsutum (upland cotton): 107934396
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Entry
107934396 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107934396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107934396
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107934396
Spliceosome [BR:
ghi03041
]
Complex A
U2 snRNP components
U2 related factors
107934396
Complex B
107934396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Tet_JBP
Motif
Other DBs
NCBI-GeneID:
107934396
NCBI-ProteinID:
XP_016722307
UniProt:
A0A1U8M660
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All DBs
Position
D10:64201225..64206497
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AA seq
1106 aa
AA seq
DB search
MEDSEKRRHRERRDRDRDRDRDRERRRSEREKSSDSDREKEREKEKHRDRGRERKDRERE
KEKERERAREKEREREKREREREREREREKREREREREREKEREREKKAREKEKRREYNS
DDSKEEKERHRKRRRRERDDEDDCNNDYKEKESKSNRGESPVRKKSGEDELEKKGKKSRE
EEMEDEQRKLDEEMEKRRRRVQEWQELRRKKEEMEREKRGEGNAVEEEEAKVGKAWTLEG
ESDDDEAASSMNAEMSMEVDDNENAKPDGKVTGDAMHEGGNSEDGKDKMVVDQNGDNGVA
ENDDEIDPLDAFMNSMVLPEVEKLSNAVVDPPPSDSNGNLKTDKKDGLSNGGQQQPKKGS
NKALGRIIPGEDSDSDYGDVENDEENLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYKPF
RKNFYIEVKEISRMIPEEVSAYRKELELKLHGKDVPKPIKTWHQTGLTSKILETIRKLNY
EKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMA
PTRELVQQIHSDIKKFTKVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT
SGGKISNLRRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILAR
KVLNKPVEIQVGGRSVVNKDITQLVEMRPESERFLRLLELLGEWYEKGKILIFVHSQEKC
DALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI
NFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQVVPDDLKAL
ADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSEDEDE
GVRKAGGDISQQTALAQIAAMAAASKASTALMQNPLSSGQLLPNAVLPISLPGVHGVSMP
GTAAVVPGSGLSGLPNEEAARKAALQAALNLQHNLAKIQADVMPEHYEAELEINEFPQNA
RWKVTHKETLGPISEWTGAAITTRGQYFPPGRIPGPGERKLYLFIEGPTELSVKRAKAEL
KRVLEDISHQSLQLPGGTQPGRYQVL
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggaagattcagaaaagagaaggcaccgtgagagaagagatagggatagggatagggat
agggatcgtgaacggcgtcgttccgagagagagaagagcagcgattccgatagagaaaag
gagagggaaaaagaaaagcatcgagataggggaagggaaaggaaagatagggaacgagag
aaggaaaaggagagggaaagagctagggagaaggaaagggaaagggaaaagcgtgaaagg
gaaagggaaagggaaagagaaagggagaagagggaaagagaaagagaaagggaaagggaa
aaagagagggagagggaaaagaaggcgagggaaaaggagaagaggagggaatataatagt
gatgatagcaaggaggagaaggaacgacataggaagcggcgaaggagggaacgcgatgac
gaagatgactgtaacaatgattataaggagaaggagagtaaatcgaataggggagagagt
cctgttaggaaaaagagtggtgaagatgagttggagaagaaagggaagaaaagtagggaa
gaggaaatggaagatgagcagcgtaaattggatgaggagatggagaaaaggaggaggagg
gttcaagaatggcaggagttgaggaggaagaaggaagaaatggagagggagaaacgtggg
gaagggaatgcagttgaagaggaggaggctaaggttggtaaagcttggacccttgaaggg
gaatcagatgatgatgaagcggcttcttcgatgaatgcggagatgagtatggaggtcgat
gataatgagaatgctaagcctgatggtaaggtaactggagatgcaatgcatgaaggtggg
aattctgaggatggaaaagataaaatggttgttgaccaaaatggggataatggggttgct
gagaatgatgatgaaattgacccattagatgcttttatgaattcaatggtgctacctgaa
gttgagaagctaagtaatgcagttgttgatcctcctcctagtgatagcaatgggaacctg
aagactgataaaaaagatggcttgagtaatggtggacagcagcagccaaagaaaggttcg
aacaaggcacttgggagaatcattcccggcgaagattcggattcggattacggggatgtt
gagaatgacgaagagaatttagaagatgaagacgatgatgagttcatgaaaagggtaaag
aagacaaaagctgaaaaactatcgattgtagaccattcaaagattgattataaaccattc
aggaaaaatttctatattgaagttaaggagatatctagaatgataccggaggaagtgtct
gcttataggaaggaattggaattgaagttacatggaaaggatgtgccgaaaccaatcaaa
acctggcatcaaactggactcacaagtaaaatattagagacaataaggaagctaaattat
gagaagccaatgccaattcaagctcaggcactgcctgtaatcatgagtggtcgagactgc
attggtatagcaaaaactggctctggtaaaacccttgcttttgtgttacctatgttaagg
catattaaagatcagccacctgtagtagctggagatgggcctattggactcattatggca
cccacaagggagcttgtacagcagattcatagtgacataaagaagtttaccaaggtaatg
ggaatcagatgtgttcctgtgtatggaggttctggtgttgcccagcagattagtgaatta
aaaaggggaacagagattgttgtatgtactccaggtaggatgattgatatactttgtacc
agtgggggaaaaattagtaatcttcgtagagtgacatacttggttctggatgaagctgac
agaatgtttgatatgggttttgaacctcaaattactcgaattgttcaaaatattcgacct
gatcgccaaactgtactattttctgctactttccctcgccaggttgagattttggcacgg
aaagtgttgaataaacctgttgaaatacaggttggtgggagaagtgttgtgaacaaggac
ataacccaattggttgagatgaggccagaaagtgaaaggttcctaagattgttagaactt
ctaggtgaatggtatgagaaggggaaaattttgatttttgtccacagtcaagaaaagtgt
gatgctttgttcagggatttgctcaaacatggttacccttgcctgtcacttcatggggcc
aaggatcagactgatcgggagtccaccatttctgattttaagagcaatgtttgcaatttg
ttgattgcaacaagtgttgcagctaggggtttagatgtaaaggagcttgaattagtgatt
aactttgatgtaccaaatcattatgaagattatgttcaccgtgttggtaggactggtaga
gctgggcggaaaggctgtgctatcacatttatctctgaggaggatgcaagatatgcaccg
gatctcgtaaaagctttagaactctctgagcaagttgttcctgatgacctgaaagctctc
gcagatggctttatggcaaaagtcaatcagggacttgagcaggctcatggaacaggttat
ggtggaagtggttttaaattcaatgaagaggaggatgaaaagagaaaagcagcaaagaaa
gcacaagcaaaagaatatgggtttgaggaagacaagtcagactcggaagatgaagatgaa
ggggtgcggaaggcaggtggtgacatctcacagcagacagcacttgctcagatagctgcc
atggctgctgcctccaaagctagtactgctttgatgcagaatcctctatcatctggccaa
ctgcttcccaatgctgtattgcctatttctcttcctggtgtacatggtgtctcaatgcct
gggactgcagcagttgttcctggtagtgggctgtctggtcttccaaatgaagaggctgct
cgaaaagctgcactgcaagctgctctcaatttacagcataacctagcaaagattcaagct
gatgttatgcctgaacattatgaagctgagttggagattaatgaattcccacaaaatgct
cgatggaaggttacccacaaggaaactttgggcccaatatcggaatggactggagctgcc
attactacgaggggccagtatttcccacctggtcggatcccaggaccaggagaacgcaag
ctttacttgttcattgaaggacctactgagttatctgttaagagagctaaggcagaactg
aaacgtgtgctggaagacatctcacaccagtccttacaacttcctggtgggactcaaccc
ggcagataccaagttttgtag
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