Gossypium hirsutum (upland cotton): 107937348
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Entry
107937348 CDS
T04793
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107937348
03015 mRNA surveillance pathway
107937348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107937348
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107937348
mRNA cycle factors
P-body specific factors
107937348
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Geminin
Motif
Other DBs
NCBI-GeneID:
107937348
NCBI-ProteinID:
XP_016725704
UniProt:
A0A1U8MJF6
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Position
A06:complement(126288169..126293915)
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AA seq
487 aa
AA seq
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MKEPLRKTKVVIRHLPPSVTEPFIISQIDDRFSDRYNWFSFRLGKCSHKQQSYSRAYINF
NRPEDVFEFAEFFDGHIFVNEKGTQFKAIVEYAPSQRVPKPSSKKDGREGTIFKDPDYLE
FLKLIAKPVENLPSAEIQLERKEAELSGAPKEAPVVTPLMEFVRQKRAAKSGTQGSITIR
KVGRKIAAASTGKPGSSGKGSEKKKYIQKDSAKGAKKSNYFVASKQEDQLVTSVAQEIRE
NGTVCGIDGPVTGITFSADSGKKKILLLKPKDREASNVPEGASEQQGASSPAVNSPGSSA
SRQGQRRKAGGKLIRSILLRNEAGQNQSSAAVQPQQKTQSPDTVKRPPQPSNTRSGMNGH
VPNEMPALKSDGDTKRVSDDKFIKKGLHGSGSGSEKHEKRTRNKDRPDRGVWAPLHRSDV
SQSSEERFIQSVQASRSMEGSNRQFGRGPAADGSVVSSEVKPSKRGGATSSGAHEKQVWV
QKSSSGS
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagccgttgcgtaaaacgaaagtggtgataaggcatctaccaccgtccgtcacc
gaaccctttattatttctcaaatcgacgatcgtttctccgatcgttataattggttctct
ttccgtctcggcaagtgcagccataagcaacagagttactcccgagcctacataaacttc
aataggcctgaagatgtctttgagtttgctgagttctttgatgggcatatatttgttaat
gagaagggtactcaatttaaggccattgttgaatatgctccttcacagcgtgtacccaag
cccagctctaaaaaggatggtcgtgaagggaccattttcaaagatcctgattatttggaa
tttctcaaattgattgcaaaacctgttgagaatcttcccagtgctgagattcagttggag
agaaaagaagcagaactatctggtgctccaaaagaagctcctgttgttacaccactaatg
gaatttgtgcgtcagaaacgagctgccaagagtggaactcaggggtcaatcactataaga
aaggttggcagaaaaattgctgctgcgtctacaggcaagcctggatcaagtggcaagggc
tctgagaagaaaaagtatattcaaaaagacagtgcaaaaggtgcaaaaaaatccaattat
tttgtagcatccaagcaagaggatcaattagtgacttctgtcgcgcaagaaataagagag
aatggaactgtctgtggtattgatggtcctgtaactggaattactttttctgctgattct
gggaagaaaaagatccttctcctaaaaccaaaagatcgagaggcatctaatgtgccagag
ggtgcatctgaacagcagggtgcatcatctcctgcagtaaattcacctggttcatctgct
tcaagacagggtcaaagacgcaaagctggtggaaagttaataaggagcatacttttgaga
aatgaagcgggccaaaatcaatcttcagcagcagtccagcctcagcagaaaactcaaagt
ccggacactgtcaaaagacctccccagccatctaatacacgatcgggtatgaatggtcat
gtccctaatgaaatgcctgcattgaaatctgatggtgatacaaaaagagtttcagatgat
aagttcatcaaaaagggactgcatggttcaggttctggaagtgagaagcatgaaaaacgt
acaagaaataaggatagacctgatcgtggtgtatgggcccctcttcatcgttctgatgtt
tcgcaatccagcgaggagcgttttatacaatcagtgcaggcctctcgatccatggaaggt
tccaatcgacaattcggtcggggccctgcagccgatggatctgttgtatcaagtgaagtc
aagccttcaaaaagaggaggtgctactagctctggagcccatgagaaacaagtttgggtt
cagaaatcatcctctggttcttag
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