Gossypium hirsutum (upland cotton): 107937757
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Entry
107937757 CDS
T04793
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03022
Basal transcription factors
ghi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107937757
09124 Replication and repair
03420 Nucleotide excision repair
107937757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107937757
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107937757
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
107937757
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
107937757
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
MetRS-N
Motif
Other DBs
NCBI-GeneID:
107937757
NCBI-ProteinID:
XP_016726206
UniProt:
A0A1U8MH86
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All DBs
Position
D10:complement(2237303..2241846)
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AA seq
451 aa
AA seq
DB search
MPQVKIIAKNFMDMVASLPAIKLDLLYRNQFICEAILRSLPPLAKKYVLQMLYIDIPITS
KSLQEWLLADGSSKHKVAIDRLIQLRVFEVIDRKKETTYKLNSTFQTNLRKHMISGGILP
REPMPQSVTARLPTSEELDAYAHEQWECFLLQLISSGQAEKSTSFSDSMMRIFQRGLLRQ
RDKEAPRLTDSGFQFLLMDTNAQLWYIIREYISNSEEQGVDQADLIAFLLELSFHTPGEA
YSLDTLTDDQTTMIKDLADLGLVKLQKGRKESWFIPTKLATNLSVSLTDSSSRKQGFVVV
ETNFRMYAYSSSKLHCEILRLFARVEYQLPNLIVGAITKESLYNAFENGITAEQIVTFLQ
QNAHPRVAEKLPSVPENVTDQIRLWETDLNRVEMTPAHFYDEFPSRDVFEAASDFARMHN
GLLWEDAKKMRMVVKAEIHMLMREHLRGQNK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaggtgaagattatcgccaagaatttcatggacatggtggcttcattgcccgcc
attaagctcgatttgctctatcgtaatcagttcatttgcgaagccattctcaggtcgttg
ccgccgctggcgaagaaatacgtgttacaaatgttgtacatcgatattcccataacatcc
aagtcgttgcaggagtggctgcttgctgatggatcatctaagcacaaagttgcgatcgat
cggttgattcagctaagagtatttgaagtaattgatcggaagaaggaaaccacttacaag
ttaaattccacgtttcagactaatctccgaaaacatatgatatctggtgggattttgcca
agagaaccgatgcctcaaagtgttactgcaaggcttccaacctcagaggagcttgatgcc
tatgcacatgagcaatgggagtgtttcttgctgcaacttataagttcaggacaagccgaa
aaatcaacgagcttcagcgattccatgatgagaatttttcagcgtggtcttttgcgtcag
agagataaagaagctccaagattaactgatagtggtttccaattcttgttgatggataca
aatgctcagctttggtatattatcagagagtatatctccaattcagaggagcaaggtgta
gatcaagcagacttaattgcttttttgctagaacttagttttcatacccctggtgaggca
tatagtttagatacactgactgatgaccagacaactatgatcaaggaccttgcagacttg
ggattggtcaaacttcagaagggcaggaaagagagttggtttatacctactaaattagcc
accaatctttcagtgagcttaacagattcatcatcaagaaaacagggatttgttgttgtg
gaaactaactttaggatgtacgcatactcatcatctaagttgcactgtgaaattttacgt
ctattcgcaagggtagagtatcaacttccaaacctcatagttggtgcaataacaaaagaa
agcctctataatgcttttgaaaatggcattactgcggagcagatagttacattccttcag
cagaacgcacatcctcgagttgctgagaaattaccatcggtacctgaaaatgtcacggat
cagataagattgtgggaaactgatttgaatagagttgagatgactccagctcatttttac
gatgaatttccttcaagggatgtctttgaggctgcttccgactttgctcgtatgcataat
ggtttactatgggaagatgctaagaaaatgcgtatggttgtcaaggcagagattcatatg
cttatgcgcgagcatcttcgtggtcaaaacaagtag
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