Gossypium hirsutum (upland cotton): 107942493
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Entry
107942493 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107942493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107942493
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107942493
Spliceosome [BR:
ghi03041
]
Complex A
U2 snRNP components
U2 related factors
107942493
Complex B
107942493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Tet_JBP
Motif
Other DBs
NCBI-GeneID:
107942493
NCBI-ProteinID:
XP_040934099
LinkDB
All DBs
Position
A10:114520456..114525711
Genome browser
AA seq
1106 aa
AA seq
DB search
MEDSEKRRHRERRDRDRDRDRDRDRERRRSEREKSSDSDREKEREKEKHRDRGRERKDRE
REKEKERERAREKEREREKREREREREREKREREREREREKEREREKKAREKEKRREYNS
DDSKEEKERHRKRRRRERDDEDDGNDDYKERESKSNRGESPVRKKSGEDELEKKGKKSRE
EEMEDEQRKLDEEMEKRRRRVQEWQELRRKKEEMEREKRGEGNAVEEEEAKVGKAWTLEG
ESDDDEAASPMNAETSMDVDDNENAKPDGKETGDAMLEGGNSEDGKDKMVVDQNGDNGVA
ENDDEIDPLDAFMNSMVLPEVEKLSNAVVDPPPSDNNGNLKTDKKDGLTNGGQQQPKKGS
NKALGRIIPGEDSDSDYGDVENDEENLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYKPF
RKNFYIEVKEISRMTPEEVSAYRKELELKLHGKDVPKPIKTWHQTGLTSKILETIRKLNY
EKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMA
PTRELVQQIHSDIKKFTKVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT
SGGKISNLRRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILAR
KVLNKPVEIQVGGRSVVNKDITQLVEMRPESERFLRLLELLGEWYEKGKILIFVHTQEKC
DALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI
NFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEDDARYAPDLVKALELSEQVVPDDLKAL
ADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSEDEDE
GVRKAGGDISQQTALAQIAAMAAASKASTALMQNPLSSGQLLPNAVLPISLPGVLGVSMP
GTAAVVPGSGLSGLPNEEAARKAALQAALNLQHNLAKIQADVMPEHYEAELEINEFPQNA
RWKVTHKETLGPISEWTGAAITTRGQYFPPGRIPGPGERKLYLFIEGPTELSVKRAKAEL
KRVLEDISHQSLQLPGGTQPGRYQVL
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggaagattcagaaaagagaaggcatcgtgagagaagagatagggatagggatagggat
agggatagggatcgagaacggcgtcgttccgagagggagaagagcagcgattccgataga
gaaaaggagagggaaaaagaaaagcatcgagataggggaagggaaaggaaagatagggaa
cgagagaaggaaaaggagagggaaagagctagggagaaggaaagggaaagggaaaagcgt
gaaagggaaagggaaagagaaagggagaagagggaaagagaaagagaaagggaaagggaa
aaagagagggagagggaaaagaaggcgagggaaaaggagaagaggagggaatataatagt
gatgatagcaaggaggagaaggaacgacataggaagcggcgaaggagggaacgggatgac
gaagatgacggtaacgatgattataaggagagggagagtaaatcgaataggggagagagt
cctgttaggaaaaagagtggtgaagatgagttggagaagaaagggaagaaaagtagggaa
gaagaaatggaagatgagcagcgtaaattggatgaggagatggagaaaaggaggaggagg
gttcaagaatggcaggagttgaggaggaagaaggaagaaatggagagggagaaacgtggg
gaagggaatgcggttgaagaggaggaggctaaggttggtaaagcttggactcttgaaggg
gaatcggatgatgatgaagcggcttctccaatgaatgcggagacgagtatggatgttgat
gataatgagaatgctaagcctgatggtaaggaaactggagatgcaatgcttgaaggtggg
aattctgaggatggaaaagataaaatggttgttgaccaaaatggggataatggggttgct
gagaatgatgatgaaattgacccattagacgcttttatgaattcaatggtgttacctgaa
gttgagaagctaagtaatgcagttgttgatcctcctcctagtgataacaatggaaacctg
aagactgataaaaaagatggcttgactaatggtggacagcagcagccgaagaaaggttcg
aacaaggcacttgggagaatcattcccggcgaagattcggattcggattacggggatgtt
gagaatgatgaagagaatttagaagatgaagacgatgatgagttcatgaaaagggtaaag
aagacaaaagctgagaaactatcgattgtagaccattcaaagatcgattataaaccattc
aggaaaaatttctatattgaagttaaggagatatctagaatgacacctgaggaagtgtct
gcttataggaaggaattggaattgaagttacatggaaaggatgtgccgaaaccaatcaaa
acctggcatcaaactggactcacaagtaaaatattagagacaataaggaagctaaattat
gagaagccaatgccaattcaagctcaggcactgcctgtaatcatgagtggtcgagactgc
attggtatagcaaaaactggctctggtaaaacccttgcttttgtgttacctatgttaagg
catattaaagatcagccacctgtagtagctggagatgggcctattggactcattatggca
cccacaagggagcttgtacagcagattcatagtgacataaagaagttcaccaaggtaatg
ggaatcagatgtgttcctgtctatggaggttctggtgttgcccagcagattagtgaatta
aaaaggggaacagagattgttgtatgtactccaggtcggatgattgatatactttgtacc
agtgggggaaaaattagtaatcttcgtagagtgacatacttggttctggatgaagctgac
agaatgtttgatatgggttttgaacctcaaatcactcgaattgttcaaaatattcgacct
gatcgccaaactgtactattttctgctactttccctcgccaggttgagattttggcacgg
aaagtgttgaataaacctgttgaaatacaggttggtgggagaagtgttgtgaacaaggac
ataacccagttggttgagatgaggccagaaagtgaaaggttcctaagattgttagaactt
ctaggtgaatggtatgagaaggggaaaattctgatttttgtccacactcaagaaaagtgt
gatgctttgttcagggatttgctcaaacatggttacccttgtctgtcacttcatggggcc
aaggatcagactgatcgggagtccaccatttctgattttaagagcaatgtttgcaatttg
ttgattgcaacaagtgttgcagctaggggtttagatgtaaaggagcttgaattagtgatt
aattttgatgtcccaaatcattatgaagattatgttcaccgtgttggtaggactggtaga
gccgggcggaaaggctgtgctatcacatttatctctgaggatgatgcaagatatgcaccg
gatctcgtaaaagctttagaactctctgagcaagttgttcctgatgacctgaaagctctc
gcagatggctttatggcaaaagtcaatcagggacttgagcaggctcatggaacaggttat
ggtggaagtggttttaaattcaatgaagaggaggatgaaaagagaaaagcagcaaagaaa
gcacaagcaaaagaatatgggtttgaggaagacaagtcagactctgaagatgaagatgaa
ggggtgcggaaggcaggtggtgacatctcacagcagacagcacttgctcagatagctgcc
atggctgctgcctccaaagctagtactgctttgatgcagaatcctctatcatctggccaa
ctgcttcccaatgctgtattgcctatttctcttcctggtgtacttggtgtctcaatgcct
gggactgcagcagttgttcctggtagtgggctgtctggtcttccaaatgaagaggctgct
cgaaaagctgcactgcaagctgctctcaatttacagcataacctagcaaagattcaagct
gatgttatgcctgaacattatgaagctgagttggagattaatgaattcccacaaaatgct
cgatggaaggttacccacaaggaaactttgggcccaatatcggaatggactggagctgct
attactacaaggggccagtatttcccacctggtcggatcccaggaccaggagaacgcaag
ctttacttgttcattgaaggacctactgagttatctgttaagagagctaaggcagaactg
aaacgtgtgctggaagacatctcacaccagtccttgcaacttcctggtgggactcaaccc
ggcagataccaagttttgtag
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