Gossypium hirsutum (upland cotton): 107954956
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Entry
107954956 CDS
T04793
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107954956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107954956
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107954956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
107954956
NCBI-ProteinID:
XP_040972508
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Position
A07:90777833..90782441
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AA seq
476 aa
AA seq
DB search
MSENGKLFIGGISWDTNEERLKEYFSSFGEVVEAVIMKDRTTGRARGFGFIVFSDPAVAE
KVIKEKHNIDGRMVEAKKAVPRDDQNIMSRSTSSIHSSPGPARTRKIFVGGLASTVTESD
FKKYFDQFGNITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKNFHELNGKMVEVKRA
VPKDLSPGPARSPLGVYNYGLNRSNSFLNGYTQGYTPSNLGGYGLRMDGRFSPVAAGRTG
FPPFGSGYGMGMNFEPGLNPGFGNSTNFNNYGRGLSPYYIGNTNRFGSPIGYDGSNGGGS
NTSFFSSVTRNLWGNGGLNYNANAASSSAYAGSGSGSIGTSAFGNSGINWSSSQISSQGG
RNNVSGNNVNFSYGSGDNSFGLGTAGHERNTGTNVVPTSSYAASNGSYDGAFADFYGGAS
FYRDTTWPSSTSERDGSGSFGYGLVSATSDVPGKSSPGYVGSYSVNKGQSNRGITT
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagaatggtaagctatttattggtggaatatcttgggacaccaatgaagagcgt
ctcaaggagtatttcagtagttttggtgaagttgtagaagcagtgatcatgaaggatcga
accacagggcgtgctcgaggtttcggtttcattgttttctctgacccagctgttgctgag
aaagtcatcaaggagaaacacaacattgatggcaggatggttgaggcaaaaaaggccgtt
cctagggatgaccagaacattatgagtagaagcactagtagcatccacagttcacctggt
cctgcacgcacaagaaagatttttgttggaggtttagcatctacagtcacagagagtgac
tttaagaagtattttgatcagtttgggaatatcacagatgttgtagtgatgtatgatcac
aacactcaaaggcctaggggttttggattcatcacttacgattcagaagaggcagtcgac
aaagtgttgctaaaaaatttccatgaactgaatggtaaaatggttgaggttaaacgagca
gttcccaaagacctgtcgccaggcccagctcgtagcccccttggtgtatataactatggt
ctgaataggagcaacagctttcttaatggctacactcagggatatactcctagcaacctt
ggaggatatggacttaggatggatggtagattcagtccagttgctgcaggtcgaactggg
tttcctccttttggttctggttatggaatgggaatgaactttgagccaggattgaaccca
ggttttggaaacagtacaaattttaataactatggacggggattgagcccttactatatt
ggaaatacaaataggtttggtagtccaattgggtatgatggaagtaatggaggtggaagt
aatacttcctttttcagctcggtgacccggaatctttggggaaatggagggcttaattat
aatgcaaatgctgctagttccagtgcctatgcaggatctggaagtgggagtataggaaca
agtgcttttggaaatagtggaattaactggagttcttctcagatttccagtcaaggtgga
aggaataatgtttctggcaataatgttaatttcagttatggaagtggtgataacagcttt
gggttggggacagcagggcatgagagaaacactgggaccaatgtagtgccaacatcatca
tatgcagcatcaaatggcagttatgatggagcctttgcagacttttatggtggtgcttca
ttttacagggataccacttggccatcatcaacatctgagcgtgatggttctggttccttt
ggctatggacttgttagtgccacttctgatgttcctggtaaaagttctcctggttatgtt
ggcagttatagtgttaataagggacaatcaaatagaggaattactacctag
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