Guyparkeria halophila: GM160_07635
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Entry
GM160_07635 CDS
T06369
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ghl
Guyparkeria halophila
Brite
KEGG Orthology (KO) [BR:
ghl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GM160_07635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghl03400
]
GM160_07635
Enzymes [BR:
ghl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GM160_07635
DNA repair and recombination proteins [BR:
ghl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GM160_07635
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QGT78781
UniProt:
A0A6I6D5T1
LinkDB
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Position
complement(1686212..1687102)
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AA seq
296 aa
AA seq
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MTAPDDVSRPDKALYPEAGWTKADVVGYYRRVAEYMLPHLAGRPLTLHRFPDGLDGEGFF
QQAWAEHFGERVERLAIRHEKPTGWVEHMRCDDADCLAFLADQGTLTFHRWAARSRALDR
PDLMIFDLDPPDGDMGELKRAARRVAALMRDCQLSPFVMTTGSTGLHVVAPLRPQADFDA
VRALAGRMAGRLAAEFPDELTTEQRIEAREGRLYLDVMRNAFGQTAVAPYSLRARPGAPV
ATPLDWVELDKGGLRSDSYTLENVFRRLGQKGDPWARMFDHAGDLAAARQAFEALD
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgccggatgacgtcagccgcccggacaaggcgctctacccggaggccggctgg
accaaggccgacgtggtcggctactaccggcgcgtggccgagtacatgttgccgcatctg
gccggccggcccctgaccctgcaccgcttccccgacggtctcgacggcgaggggttcttc
cagcaggcctgggccgagcacttcggtgagcgggtcgagcgattggcgatccgtcacgaa
aagcccacggggtgggtcgagcacatgcgctgcgatgatgccgattgcctggcgtttctc
gccgatcagggaacgctgacctttcatcgctgggctgcacgctcgcgcgcgctcgaccga
cccgacctgatgatcttcgatctcgacccacccgatggcgacatgggggagctcaagcgc
gcggccagacgggtcgccgcgctgatgcgcgactgccagctctcgcctttcgtgatgacc
acggggtcgaccggactgcacgtggtcgcgccattgcgtccgcaagccgatttcgacgcg
gttcgggccctggccggccgaatggccggacgactcgcggcggagtttcccgacgagctg
actaccgagcagcgcatcgaggctcgcgaggggcggttgtaccttgacgtgatgcgcaat
gccttcggccagacggccgtggcgccgtactccctgcgcgcccgacccggggcgcccgtg
gccaccccgctcgactgggtcgagctggacaagggcgggctgcgttcggacagctacacg
ctcgagaacgtgttccgccgcctgggccagaagggcgacccctgggcgcggatgttcgac
cacgccggtgacctggccgccgcacggcaggccttcgaggcgctggattga
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