Gordonia hongkongensis: MVF96_22330
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Entry
MVF96_22330 CDS
T08182
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ghn
Gordonia hongkongensis
Pathway
ghn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ghn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MVF96_22330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghn03400
]
MVF96_22330
Enzymes [BR:
ghn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MVF96_22330
DNA repair and recombination proteins [BR:
ghn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MVF96_22330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UPG68078
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All DBs
Position
4947138..4949507
Genome browser
AA seq
789 aa
AA seq
DB search
MAGGETLEVDGRRISITNLSKVLYPATGTRKFEVIDYYSRIADVLLPHVRNRLITRKRWP
NGVESTPFFEKNVPESAPDWIRRHGIQHSERVINYAMADDRATLVWLAQMAVLEIHTPQW
RLPMGPDGAPMANRIVFDLDPGPRVPLHRTAEVACEIRNWLGGATTYPVTSGGKGIHLYA
RLPKPVTSDAARKVAQEVANEFARQHSDFITAKMSKSLRDDKVFIDWSQNTAAKTTLAPY
SMRGREQPWVAAPRTWEEMEDPGLSQLLYTEVLDRVEEFGDLLDGLDDPYDDEPEVVVEP
AAGQVINLKEYRRKRDQSKTPEPFGDEAHRQRIEAESSAAEPDSSDTQTERAPIFVIQEH
HARRLHYDFRLEHDGVLVSWAVPKNLPTDPDQNRLAVQTEDHPMDYADFEGDIPAGEYGG
GHVSIWDRGTFELEKWRDKEVIVRLHGERVQGRYALIRTGEKNWLAHLMSDEPRPIVPDS
LTDPRPMLATDESIDGLNGRDWAFEGKWDGYRLLIRSVGGEFRLTSRSGIDMTADFPELT
GLADDLGLMDVVLDGEVVAIDSSGRTNFTLLTSRRHTDEPYSLRLHLFDILFLNGSSLLR
KPWSVRRELLEELAPAFRNSAFVEVPPLLPGPGSAAVEYSREHNLEGVVAKRRNSVYQQG
RRSTTWLKHKNWSDIEVVVGGYRPGRGNRAHTIGSLLIGLPEETGLRYVGRVGTGFTDAQ
LRSLAEELGPLEISRSPFLDKLDRPVESSAVWVLPKIVGEVRFMDWTTAGHLRHPSWRGI
RRDKLPGDL
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcggcgagacactggaggtcgacggtcggcggatctcgatcaccaatctctcg
aaggtgctctatccggcgacggggacgcggaagttcgaggtcatcgactactactcgcgg
atcgccgatgtcctcctcccccacgtacgcaaccgcctcatcacccgtaagcggtggccc
aacggcgtcgagtcgaccccgttcttcgagaagaacgttcccgagagcgcacctgactgg
atccgacgccacggcatccagcacagcgagcgggtcatcaactatgcgatggccgacgat
cgcgccacgctggtctggctcgcgcagatggccgtgctcgagatccacacgccgcagtgg
cggcttcccatggggcccgacggcgcgccgatggccaaccgcatcgtcttcgacctcgat
cccgggccacgggtgccgctgcaccggaccgcggaggtggcgtgcgagatccgcaactgg
ctcggcggggcgacgacgtacccggtgaccagcggcggcaagggcatccacctctacgcg
cggctcccgaagcccgtgacgtcggatgcggcgcgcaaggtggctcaggaggtcgccaac
gagttcgcccgtcagcacagcgatttcatcaccgccaagatgtccaaatcgctgcgcgac
gacaaggtcttcatcgactggagccagaacaccgccgccaagaccactctcgcgccgtac
tcgatgcgcggacgcgagcagccgtgggtggccgcgccgcgcacctgggaggagatggag
gaccccggactctcccaactgctctacaccgaggtgctggaccgcgtcgaggagttcggc
gatctcctcgacggcctggacgacccctacgacgacgagccggaggtcgtcgtcgagccc
gcggcgggacaggtcatcaacctgaaggagtaccggcgcaagcgcgaccagtcgaagaca
cccgaacccttcggcgatgaagcgcatcgacagcgcatcgaagccgagagctctgctgca
gaacctgattcctcggacacgcagaccgagagggcaccgatcttcgtgatccaggagcac
cacgcccgacggttgcactacgacttccggctggaacacgacggggtcctggtgtcgtgg
gccgtaccgaagaacctgcccaccgaccccgaccagaaccggctcgcggtgcagaccgag
gaccacccgatggattacgccgacttcgagggcgacatcccggcgggcgaatacggcggc
ggtcacgtgtccatctgggacaggggcacattcgagctcgagaagtggcgggacaaggag
gtcatcgtccgcctccacggcgagcgcgtgcagggacggtacgccttgatccggaccggt
gagaagaactggcttgcccacctgatgagcgacgaaccgcgtccgatcgtccccgacagc
ctcaccgacccgcgcccgatgctcgcgaccgacgagtcgatcgacggactcaacggtcga
gactgggcgttcgagggcaaatgggacggatatcggctcctcatccgttcggtcggcggc
gagttccggctcacctcccgatcgggtatcgacatgaccgccgacttccccgaactcacc
ggcctcgcagacgatctcggcctcatggacgtggtgctcgacggcgaggtcgtcgcgatc
gactcgtcgggccgcaccaatttcacgctgctgacctcacgtcggcacaccgacgagccg
tattcgttgcggctacacctgttcgacatcctgttcctgaacggttcgtcgttgttgcgc
aagccatggtcggttcggcgcgaactcctcgaggagctggcgcccgcgttccgcaactcc
gccttcgtcgaagtgccgccgctgcttccgggcccgggatcggccgccgtcgagtacagc
cgtgaacacaatctcgaaggcgttgtcgccaagcgccgcaactcggtgtatcagcaggga
cgccggtcgacgacctggctgaaacacaagaactggagcgacatcgaggtcgtggtcggc
ggatatcggccgggccgcggcaaccgcgcgcacaccatcggttccctgctcatcggtttg
cccgaggagaccggactccgctacgtcggtcgcgtgggaaccggcttcaccgacgcacag
ttgcgttcgcttgcagaggaactcggaccgttggagatctcgcggtcgcccttcctggac
aaactcgaccggcccgtcgagtccagcgcggtgtgggtcctgccgaagatcgtcggcgag
gtccggttcatggactggacgacggccgggcatctgcggcatcccagctggcgggggatc
cggagggacaaactgcccggtgatctgtga
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