Grimontia hollisae: AL542_11880
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Entry
AL542_11880 CDS
T04260
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
gho
Grimontia hollisae
Pathway
gho02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gho00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AL542_11880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gho03021
]
AL542_11880
Transcription machinery [BR:
gho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AL542_11880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GAS
GerE
TMPIT
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
AMG30986
UniProt:
A0A377HIW6
LinkDB
All DBs
Position
1:complement(1732199..1734046)
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AA seq
615 aa
AA seq
DB search
MDQNPQSQLKLLVAKGKEQGYLTYSEVNDHLPEDIVDSDQIEDIIQMINDMGIQVVETAP
DADELMMSETVADEDAVEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQVSVAEYPGSISSLLDQFDKVEAEELRLTDIISGFVDPNQDDIAPTATHI
GSELTDEQLDDEDDDVDDDDDEDSEDEAEEDTGIDPELAREKFNELRVAYEGMQQSIQKY
GRFHEQTTVAIAELSEVFKQFRLVPKQFDRLVNEMRDTMDRVRTQERIIMRLCVDQAKMP
KKTFVQLFAGNESSDAWLDKALASDKPYAERLKQHEEDLRRCIQKLKIVEDETGLSVERV
KDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
LPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPMDSATMN
NLKMATSEVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPSRSEVLRSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaatccgcagtcacagctaaagttgcttgtcgccaaaggtaaggaacaaggc
tatctaacctattcagaagtaaatgaccacctaccggaagacattgtcgattctgatcag
atagaagacatcattcaaatgatcaacgacatgggtatccaggtggtggaaacagcgccg
gatgccgatgagctgatgatgtctgaaactgtcgcagacgaagatgccgttgaagccgcc
gcagcagcactttccagcgttgaatctgaaataggtcgtaccactgaccctgtacgcatg
tacatgcgtgaaatggggacagtagaactgcttacccgtgaaggcgaaatcgacatcgcc
aaacgcatcgaagatgggataaaccaagtacaggtatcggttgccgagtacccaggttct
atctcatcactgctggaccaatttgacaaagtggaagctgaagagcttcgcctgactgac
atcatctccggattcgttgatcctaaccaagacgacatcgcccctactgcgacccacatc
ggctcagagctcaccgacgagcaattggacgatgaagacgacgacgtagacgacgatgac
gacgaagatagcgaagacgaagcggaagaagatactggcatcgatccagagctggcgcgt
gaaaagttcaatgaactgcgcgtcgcttacgaaggcatgcaacagtcaatccagaaatac
ggccgcttccacgaacagaccaccgtcgccatcgccgagttgtctgaagtgttcaagcag
ttccgtctggtaccaaaacagttcgaccgcctagtcaacgaaatgcgcgacaccatggat
cgtgtacgcactcaagagcgcatcatcatgcgcctgtgtgtcgaccaagcaaaaatgccg
aagaaaaccttcgtacaattgtttgccggcaatgaatcatcagacgcatggctggataag
gcgttggcctctgataaaccatacgcagaacgcctcaagcagcacgaagaagatcttcgc
cgttgcatccagaagctgaaaatcgttgaagacgaaaccggtctttctgttgagcgcgta
aaagacatcagccgtcgcatgtccatcggtgaagcgaaagcccgccgtgcgaagaaagag
atggttgaagcaaacttgcgtctggttatttctatcgccaagaaatacaccaaccgtggc
ctgcaattcctggatttgattcaggaaggtaacatcggtctgatgaaagcggtagacaag
ttcgaataccgtcgtggttacaagttctcgacgtacgcaacatggtggatccgtcaggca
atcacccgttcaatcgctgatcaggcgcgtactatccgtatccctgttcacatgattgaa
accatcaacaaactgaaccgcatctcacgccagatgcttcaggaaatgggccgtgaacca
ctgccggaagagctggcagaacgcatgcaaatgccagaagacaagatccgcaaagtgctg
aagatcgccaaagagccaatctccatggaaacccctatcggtgacgatgaagattcacat
ctgggcgactttatcgaggataccaccctcgaactgccaatggattctgccaccatgaat
aacctaaaaatggcaaccagcgaagtactggcaggcctgacgccacgtgaggcgaaagtg
ctgcgtatgcgtttcggtatcgacatgaacaccgaccacacattggaagaagtgggtaaa
cagtttgacgtaacacgtgagcgtatccgtcaaattgaagcaaaagcactgcgtaaactg
cgtcacccaagccgctcagaagtactgcgcagcttcctggatgaataa
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