Gordonia iterans: C6V83_00850
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Entry
C6V83_00850 CDS
T05370
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
git
Gordonia iterans
Pathway
git03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
git00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C6V83_00850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
git03400
]
C6V83_00850
Enzymes [BR:
git01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C6V83_00850
DNA repair and recombination proteins [BR:
git03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C6V83_00850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AVM01922
UniProt:
A0A2S0KJQ1
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All DBs
Position
183258..185360
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AA seq
700 aa
AA seq
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MARNELEVDGRTISLTHLDRVLYPDTGTRKYDVIAYYVGIADAILPHLAARPVTRKRWPS
GTGTEPFFEKTMPAGAPDWIPRFTIAHSTEDKVYPVASSAAVLVWMAQMAALELHVPQWR
IDLSEGTGARRTARLVLDLDPGPDVPLSQCAQVALTIRDVLADAGIESWPVTSGGKGIHV
YGRLPAPVRSDSARAVAKEIATSLERAYPDDVTASMSKAARPGKVFVDWSQNSSAKTTLS
PYSLRGLEQPWAAAPRKWSELAEADLRQLQYSEVLERFSAAGDLLAELDGPAPTLPEGVV
DLGEYRRHRRADVDDSVSTRSARSTIEQGTAPISPPSTTQPTPPTPPPNTTQPTPPPSPN
HATRAGSSTRSAGADTEQTVSARSAAGENGTVVPLRPMLAVDESIEGLEAHDWAFEGKWD
GYRILVRFADGDLRFRSRSGIDMTADFPELGVLREALSGHSITLDGEVVALDGTGRTDFT
LLASRRRRPGEYLLRLYLFDLLELDGHDLSALPWEQRRALLEELTPWFAATPIVQIPGLL
DGPGDRAVAEAKAHGWEGVVAKRRSSPYRPGSRSPDWRKQKNWNDVEVVIGGFRMGREGN
DRNLGSVLVGLPEETGLRYIGRVGTGWTQSQAADLLAELRDLEIRMCPFVGGVDAPVASS
ATWVLPKLVADVRFMDWTSTGHLRHPSWRGIRRDKLPGDL
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcaacgaactggaggtcgacggacgcacgatctcgctgacccatctcgatcgc
gtcctctaccccgacaccggcacccgaaagtacgacgtcatcgcgtactacgtcgggatc
gccgacgcgatcctgccccacctggcggcccgccccgtcactcgcaaacgctggccgtcg
gggacgggcaccgaaccgttcttcgagaagaccatgccggccggtgcaccggactggatc
ccgcgcttcaccattgcgcactccaccgaagacaaggtctatcccgtcgcgtcgagcgcc
gcagtgttggtatggatggcgcagatggccgcactggaacttcatgtgccgcaatggcgg
atcgacctgtcggaaggcaccggcgcgcgccgcaccgcacgcctggtcctggacctggat
ccaggcccggacgtccccctttcccagtgcgcacaggtggcgctcaccatccgcgacgtg
ctcgccgacgccggcatcgagtcgtggccggtcaccagcggcggcaagggcatccacgtg
tacggtcgactacccgcgccggtccgcagcgactcggcgcgcgccgtcgccaaggagatc
gcaacctctctggagcgggcctatccggacgacgtcaccgcttcgatgagcaaggccgcc
cggccgggcaaggtgttcgtcgactggagccagaactcctcggccaagacgacgctcagc
ccgtactcgctccgcgggctcgagcagccctgggccgcggcgccgcgcaagtggtccgag
ctcgccgaagccgatcttcgccagctgcagtattcggaggtgctggaacgcttctccgct
gccggtgacttgctggccgagctggacggaccggcgccgacgcttccggaaggcgtcgtc
gacctcggtgagtaccgcagacaccgccgggcggacgtcgacgactcggtttcgactcgc
tccgctcgctcaaccatcgagcagggcacagcgccgatctccccaccgagcacaacccag
cccactccacccactcccccaccgaacacaacccagcccactcccccaccgagcccaaac
cacgccacccgcgcagggagctccacgcgttccgccggggcagacaccgagcagactgtc
tccgctcgatcggccgccggggagaacgggaccgtggtgccgcttcggccgatgctcgcc
gtcgacgagtcgatcgaaggactcgaagcgcacgactgggcgttcgagggcaaatgggac
ggctaccggattctggtgcggttcgccgacggggatctgcgcttccggtctcggtccggc
atcgacatgaccgccgacttccccgagctcggcgtcctgcgcgaggcgctgtccggacac
tcgatcacgctcgacggcgaggtggtagccctcgacggaaccggtcgcaccgacttcacc
ctcctggcctcgcgccgtcgcagacccggggagtacctcctgcgcctgtacctcttcgac
cttctcgagctcgacgggcacgacctgtcggcgctgccgtgggagcagcggcgagccctg
ctcgaggagctgacgccctggttcgccgccaccccgatagtccagattcccggcttgctc
gacggtcccggcgaccgcgccgtcgccgaggccaaggcgcacgggtgggagggagtggtc
gccaagcggcgctcgtctccctaccgacccggatcccgcagtccggattggcgcaaacag
aagaactggaacgacgtggaagtggtgatcggcggattccggatgggccgcgagggcaac
gaccggaatctcggctccgttctggtcgggttgccggaggagacgggactgcgctacatc
ggccgggtcggcaccggctggacccaaagccaggccgcggacctgctcgccgagctccgc
gacctggagatccgcatgtgcccgtttgtgggcggcgtcgacgccccggtcgcctccagc
gccacctgggtgctcccgaagttggtcgccgacgtccgtttcatggactggacctccacc
gggcatctgcgccacccgtcgtggcgcggcatccgccgcgacaagctccccggcgacctg
tga
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