Geobacillus genomosp. 3: M493_00840
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Entry
M493_00840 CDS
T02798
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gjf
Geobacillus genomosp. 3
Pathway
gjf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gjf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M493_00840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gjf03021
]
M493_00840
03400 DNA repair and recombination proteins [BR:
gjf03400
]
M493_00840
Enzymes [BR:
gjf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M493_00840
Transcription machinery [BR:
gjf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M493_00840
DNA repair and recombination proteins [BR:
gjf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M493_00840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AGT30559
UniProt:
S5YV42
LinkDB
All DBs
Position
118945..122544
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNKFEYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPGDTPLEKKQLLSEKEYRAYREKYGQSFQASMGAEAIKKLLQ
DIDLDKEVTTLKEELKTAQGQRRARIIKRLEVLEAFRSSGNDPAWMVLDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVERGLAHNIKSAKRKIERVHPEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEREGAVGEGMVFKDTDEALLAYHNGYVHLHSRIAVH
AGSLKNETFTEEQNNKLLLTTVGKLIFNEILPKSFPYINEPTTENIEGRTPDKYFLDKGT
DVREEIRKRELVPPFKKKVLGQIIAEVFKRFKITETSKMLDRMKDLGFKYSTKAGITIGV
ADIVVLPEKQEILDEAQAKVDTVLKQFRRGLITDEERYERVISVWSAAKDKIQDRLMKSL
DKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGILARALTDGTEVVVKLE
ERLVGRYAHKTVHHPETGKVIVRKDEMITEDIANEIVKAGVTEVWIRSVFACNTRHGVCK
KCYGRNMATGMDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQELF
EARNPKGQAVISEIDGTVVSINETRDHQYEIVVQSEVETRSYVAPYNARLKVEEGQHVER
GQELTEGSVDPKQLLRVRDITSVQEYLLREVQKVYRMQGVEISDKHIEVMVRQMLRKVRV
IDAGDTDVLPGTLLDVHQFTDVNTQAIREGKRPATARPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMARYRNVKPAVKKETAGDTVPSK
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtcaataaattcgagtatatgaaaatcgggctcgcttccccggagaaaatt
cgctcttggtcgtacggtgaagtcaaaaaaccggaaacgatcaactaccggacgttaaag
ccggaaaaagacggcctgttttgtgagcgcattttcggcccgacgaaagactgggagtgc
cattgcggcaaatataagcgcgtccgttacaaaggggttgtttgtgaccgctgcggcgtc
gaggtgacgcgttcaaaagtccgccgcgaacggatgggtcatatcgagctcgccgctccc
gtttcgcacatctggtattttaaaggcatcccgagccggatgggtcttgtgcttgacatg
tcgccacgggcgctcgaggaagtgatttactttgcttcttacgtcgtcaccgacccgggc
gatacgccgcttgagaaaaaacagttgttatcggaaaaagaataccgcgcctatcgcgag
aaatacggccagtcgttccaagcatcgatgggggcggaggcgattaaaaagcttctccaa
gacatcgacttggataaagaagtaactacactgaaagaagagttgaaaacggcgcaaggg
cagcggcgcgcccgcatcattaaacgccttgaagtgcttgaggcgttccgcagctcggga
aacgacccggcttggatggtgctcgatgtactgccagtcattccgccggaactccgcccg
atggtccaactcgatggaggacggtttgcgacatcggacttaaacgatttataccgccgt
gtgattaaccgcaacaaccgtctgaaacggttgcttgaccttggcgcgccgaacattatc
gttcaaaacgagaaacggatgctgcaagaggcagtcgatgctttgatcgacaacggccgc
cgcggccgcccggtcactgggccggggaaccgcccattaaagtcgctttcccatatgctg
aaaggaaagcaaggacgcttccggcaaaacttgctcggcaaacgggtcgactattccggc
cgttccgtcattgttgtcggtccgaacttaaaaatgtatcaatgcgggctgccgaaagaa
atggcgctcgagctgtttaagccgttcgtcatgaaggagcttgtcgagaggggcttggcg
cataacattaaaagcgcaaaacggaaaattgaacgcgtacaccctgaggtatgggatgta
cttgaagacgtcattaaagagcatccggtgttgttaaaccgtgccccgacgctccaccgc
ctcgggattcaggcgtttgagccgacgcttgtcgaaggccgggcgatccgtcttcatccg
ctcgtttgtacggcgtacaatgcggactttgacggcgaccaaatggcggtgcacgtgccg
ctgtcggccgaggcacaggctgaagcacgcttgttgatgctggcggcgcaaaacattttg
aacccgaaagatggaaagccggtcgttaccccttcgcaagacatggttttaggaaactat
tacttgacgatggaacgcgagggggcagtcggcgagggcatggtattcaaggatacggac
gaggcgctgctcgcctaccataacggttatgtccatctccattcacgcatcgctgtccat
gccggctcgctgaaaaacgaaacgtttaccgaggaacaaaacaacaaactgctgctgacg
acggttgggaagctcattttcaacgaaattttgccgaagtcgttcccgtacattaacgag
ccgacgacggaaaatatcgaagggcggacaccggataaatatttccttgacaaagggacc
gacgtgcgcgaagagatccgcaagcgcgaacttgtgccgccgtttaagaaaaaagtgctt
gggcaaattatcgccgaagtattcaagcggttcaaaattaccgaaacatcaaagatgctc
gaccgcatgaaagatctcggtttcaaatactcaacgaaagccggcattacgatcggcgtt
gctgatatcgttgttttgccggaaaaacaagaaattttggatgaagcacaagcgaaagtt
gacaccgttttgaagcagttccgccgcgggttgattaccgacgaagagcggtatgaacgc
gttatctccgtttggagcgcggcgaaagataaaatccaagatcggttgatgaaatcgctc
gataagcgcaacccgatctttatgatgagcgattccggagcgcgggggaacgcgtcgaac
tttacgcagctcgcagggatgcgcggcttgatggccaacccggcgggccggattatcgag
ctgccgatcaaatcgtcgttccgcgaaggcttaacggtattggagtacttcatctcgacg
cacggcgctcggaaagggttggcggatacggcgttgaaaacggccgattcgggctatctc
acgagacgtctcgttgacgtggcgcaagatgtcatcgtccgtgaagaagactgcggcacc
gaccgcggcattttggcgcgcgcgttaacggacggtacggaagtcgtcgtcaagcttgag
gaacggcttgtcggccgctatgcgcacaaaacggtgcaccatccggaaacgggcaaagta
atcgtccggaaagatgagatgattactgaagatatcgcgaatgagatcgtcaaggccggt
gttacggaagtatggattcgctccgtctttgcttgtaacacgcgtcacggtgtgtgcaaa
aaatgttacggtcgcaacatggcgacgggcatggacgttgaagttggcgaggcggtcggt
attatcgccgctcaatcaatcggcgagccgggtacgcagctgacaatgcggacgttccat
acgggcggcgtcgccggggacgatatcacccaaggtttgccgcgggtgcaagagctgttt
gaagcgcgcaacccgaaagggcaagcggttatttcagaaattgatggtacggttgtctcg
attaacgaaacccgtgaccatcagtacgaaatcgttgtgcaaagcgaagtcgagacgcgc
tcgtatgtagccccatacaatgcacgtctaaaagtcgaagaagggcagcacgttgaacgc
ggccaggagttaacggaaggctcggttgacccgaaacagctgctgcgcgtacgagatatt
acgtccgttcaagaatacttgctccgtgaagtgcaaaaggtgtaccggatgcaaggggtc
gaaattagcgataagcacattgaggtgatggtgcggcaaatgctgcgcaaagtgcgcgtt
atcgatgccggcgatacggatgtgctgccgggcacgcttttggatgttcaccagtttacg
gatgtcaatacgcaggctatccgcgaaggaaagcggccggcaacagcccgcccggtgctg
cttggcattacgaaagcgtcgcttgaaacggattcgttcttgtcggcggcttcgttccaa
gaaacgacgcgcgtcttgaccgatgcggcgatcaaaggaaaacgggacgagttgctcggc
ttgaaagaaaacgtcattatcggcaaacttgtcccggccggaacaggtatggcccgctac
cgcaacgtaaagcctgccgtcaagaaggaaacggctggcgataccgttccgtctaaataa
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