Gallaecimonas kandeliae: PVT67_07315
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Entry
PVT67_07315 CDS
T09225
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gkn
Gallaecimonas kandeliae
Pathway
gkn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gkn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PVT67_07315 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gkn03400
]
PVT67_07315 (mfd)
Enzymes [BR:
gkn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PVT67_07315 (mfd)
DNA repair and recombination proteins [BR:
gkn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PVT67_07315 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
RecG_dom3_C
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WKE67039
LinkDB
All DBs
Position
complement(1505143..1508601)
Genome browser
AA seq
1152 aa
AA seq
DB search
MKALELLELPSKGGDRQHWINLAGDAQILAIMEACHRHGGFNLLVTSDSPTANRLVEALS
SLMEGVQLFPDWETLPFDTFSPHQDIISERLTALYQLPYKTGGLMVLPVTTLLGRLAPRG
YVDGATLLLKKGEVRPLERLRDQLAGAGYRLVDQVMEHGEFAVRGGLIDLYPMGESSPYR
VDFFDDEIETLRRFDPESQRSTGEVEEIRLLPGHEFPMTAAGIERFRKNYRHRFDAPTAP
ESLYQQVSKGQQVPGIEYYLPLFFDDTASLFDYLPAGTQLLSVGDLESAMAAFWRDLEYR
FEERRHDRLRPILAPRELFVETGDCFAALNQYPRLALHQGGEVEGKGGVQDAGALPLPEL
AIDAKGEQPLKKLLDWLAQDPEPALFVAESEGRREALLALLGKAGLHPARIKRLADWLAA
PQAQHGVLVAPLEAGCVARYQGQGLKLVPEAALTGPRVVQRKKRKKEDGINTDAIIRSLA
ELSIGQPVVHREHGVGRYQGLTTLGAGGIDTEYLMLEYAKGDKLYVPVASLHLISRYAGS
EEAPLHRLGGEAWEKARRKAAEKVRDVAAELLDVYARREAKPGFAFALDQDGYRAFCDAF
PFEETDDQLDAIEAVVRDMTAKRAMDRLVCGDVGFGKTEVAMRAAYIAVSNNRQVAVLVP
TTLLAQQHFENFRDRFAEVPVRIEAISRFQSPAEQKAILKDAAEGKVDILIGTHKLLQKD
VKFDDLGLLIVDEEHRFGVRQKEQVKKLRAEVDILTLTATPIPRTLNMAMSGMRDLSVIA
TAPARRLAIKTFVREFDKALVREAVLREIRRGGQVYYLHNEVESIEDTAKMLEELIPEAR
VSVAHGQMRERELEKVMADFYHQRHNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLH
QLRGRVGRSHHQAYAYLMTPHPKRMTKDAVKRLEAIASLEALGAGFLLATQDLEIRGAGE
LLGEDQSGQIAAIGFDLYMDMLDEAVEALKAGKEPSLTGVLASQCEVDLRLPALLPHDYI
PDVGTRLQLYKRIASAKDVEELRELNIELIDRFGLLPDAAKQLFKTTEIRLLANPLGLTR
VEASSQGISLDFSEQTKVDPGYLIGLLQQKPSLYRLEGPTRFKVLKQLDQPAKRLDEVQQ
LLEELARNAKAA
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcgctggaactactggaactgccctccaagggcggcgaccgtcaacactggatc
aacctggccggggacgcacagatcctggccatcatggaagcctgccaccgccacggcggt
ttcaacctgctggtgacgagcgacagccccaccgccaaccgcctggtggaagccctctcc
agcctgatggagggcgtgcagctcttccccgactgggaaaccctgcctttcgacaccttc
tcgccgcaccaggacatcatctcggaacgcctcaccgccctctaccagctgccctacaag
acgggcggcctgatggtgctgccggtcaccaccctgctgggccgcctggctccccgtggc
tacgtggacggcgccacattgctgctgaaaaagggcgaagtcaggcccctggagcggctg
cgcgaccagctcgcaggcgccggctaccggctggtggaccaggtgatggagcacggcgag
ttcgccgtgcgcggcggcctcatcgacctctaccccatgggggaatccagcccctaccgg
gtggatttcttcgacgatgaaatcgagacgctgcgccgtttcgaccccgagtcccagcgc
tccaccggcgaggtggaggagatccggctgctgccgggccacgagttccccatgacggcg
gccggcatagagcgttttcgcaagaactaccgccaccgtttcgacgccccgacggccccc
gaatccctctaccagcaggtctccaagggccagcaggtgccgggcatcgagtattacctg
ccgctcttcttcgacgacaccgccagcctcttcgactacctgccggccggcacccagctg
ctgtcggtgggggatctggaaagcgccatggccgccttctggcgcgacctggaataccgc
ttcgaagagcgccgccacgaccggctgaggcccatccttgccccccgcgagctcttcgtc
gagaccggcgactgcttcgcggccctgaaccaatacccgcgcctggccctgcaccagggc
ggcgaagtggaaggcaagggcggcgtccaagacgccggcgccctgcccctgcctgaactg
gctatcgacgccaagggcgaacagccgctcaagaagctgctcgactggctggcacaggac
cctgagccggcgctcttcgtcgccgagtccgagggccgccgcgaggccctgctggcgttg
ctgggcaaggccggcctgcacccggcgcgcatcaagcgcctggccgattggctggccgcc
ccccaggcccagcacggcgtgctggtggcccccctggaagcgggctgcgtcgcccgctac
caaggccagggcctgaaattggtgccggaagcggccctcaccggccccagggtggtgcag
cgcaagaagcgcaagaaagaagacggcatcaacaccgatgccatcatccgcagcctcgcc
gagctctccatcggccagccggtggtgcaccgcgagcacggggtgggccgctaccagggg
ctcaccaccctgggggccggcggcatcgacaccgaatacctgatgctcgaatacgccaag
ggtgacaagctctatgtgcctgtcgcctccttgcacctcatcagccgctatgccggcagc
gaggaagctcccttgcaccgcctgggcggtgaagcctgggaaaaggcgcgccgcaaggcc
gccgaaaaagtgcgggacgtggcggccgagctcttggacgtctacgcccggcgcgaggcc
aagccgggctttgccttcgccctcgaccaggatggttaccgcgccttctgcgacgccttt
cccttcgaggagacggacgatcagctcgacgccatcgaggccgtggtgcgggacatgacg
gccaagcgcgccatggaccgcctggtctgcggcgatgtcggtttcggcaagacggaggtg
gccatgcgcgccgcctatatcgccgtctccaacaaccgccaggtggcggtgctggtgccc
accaccttgctggcccagcagcatttcgagaacttccgcgaccgcttcgccgaggtgccg
gtgcgcatcgaggccatctcccgcttccagagcccggccgagcagaaggccatcttgaag
gacgccgccgagggcaaggtggacatcctcatcggcacccacaagttgctgcagaaagac
gtcaagttcgacgacctgggactgctcatcgtcgacgaagaacaccgtttcggggtgcgc
cagaaggagcaggtgaaaaagctgcgggccgaggtggatatcctcaccctcaccgccacc
cccataccccgcaccctcaacatggccatgtcggggatgcgcgatctctccgtcatcgcc
acggccccggcccggcgcctggccatcaagaccttcgtgcgcgagttcgacaaggccctg
gtgcgcgaggcggtgctgcgggaaattcgccgcggcggccaggtctactacctccacaac
gaggtggagagcatcgaagacaccgccaaaatgctcgaagagttgatccccgaggcgcgt
gtcagtgtcgcccacggccagatgcgcgagcgtgagctggaaaaggtgatggcggacttc
taccaccagcgccacaacctgctggtgtgcaccaccatcatagagaccggcatagacgtg
cccacggccaacaccatcatcatggacagggccgacagcctgggcctggcccagctgcac
cagttgcgcggccgggtcgggcgcagccaccaccaggcctacgcctatctgatgacgccg
caccccaagcgcatgaccaaggacgccgtcaagcgcctcgaggccatcgcctccctcgaa
gccctgggggccggcttcctgttggccacccaggacttggagatccgcggcgccggcgaa
ctgctgggcgaagatcagagcggccagatagcggccatcggcttcgacctctacatggac
atgctggacgaggcggtcgaagccttgaaggccggcaaggagcccagcctcacaggggtg
ctggccagccaatgcgaggtggacctgcgcctgccggccctgctgccccatgactacatc
cccgacgtcggcacccggctgcagctctataagcgcatcgcctcggccaaggacgtcgaa
gagctgcgcgagctcaatatcgagcttatcgaccgcttcggcctcttgccggacgcggcc
aagcagctcttcaagaccaccgagatccgcctcctggccaaccccctggggctgacccgg
gtggaggcctccagccaggggatcagtctcgacttttctgaacagaccaaggtcgacccc
ggctatctcattggccttttacaacaaaagccgtcactctatcgcctggaagggccgacg
cgcttcaaggtgctcaaacaactggaccagccggcaaaacggctggatgaagtgcagcaa
cttctggaggaacttgcccgcaatgcaaaagctgcttaa
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