Giardia lamblia: GL50803_0024133
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Entry
GL50803_0024133 CDS
T01047
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
gla
Giardia lamblia
Pathway
gla03008
Ribosome biogenesis in eukaryotes
gla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gla00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
GL50803_0024133
09123 Folding, sorting and degradation
03018 RNA degradation
GL50803_0024133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gla03021
]
GL50803_0024133
03019 Messenger RNA biogenesis [BR:
gla03019
]
GL50803_0024133
03009 Ribosome biogenesis [BR:
gla03009
]
GL50803_0024133
03016 Transfer RNA biogenesis [BR:
gla03016
]
GL50803_0024133
Transcription machinery [BR:
gla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
GL50803_0024133
Messenger RNA biogenesis [BR:
gla03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
GL50803_0024133
Ribosome biogenesis [BR:
gla03009
]
Eukaryotic type
Pre-60S particles
RNases
GL50803_0024133
Transfer RNA biogenesis [BR:
gla03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
GL50803_0024133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
Motif
Other DBs
NCBI-GeneID:
5700724
NCBI-ProteinID:
XP_001707816
UniProt:
A8BDL3
LinkDB
All DBs
Position
4:complement(1971400..1974108)
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AA seq
902 aa
AA seq
DB search
MGVPSFFRWIVQRYGSVIDNVIEALPDTYEANIDGGALPLGFAIDNLYFDTNGLIHPCFH
PEGRPQPETEAEVFEEIFQVIDRVVSICRPRRLLYLAVDGPAPRAKLNQQRSRRFMAAYE
RQIKQRAQERRLMNMNLGDAEPSLKKLSFEEGNAMDTSTENVLDSNAITPGTPFMSRLSV
ALKYYVANRQANSKLWRHLTVLYADAWSPGEGEHKIMSFVRIQRSQPGYDPCTVHCIYGL
DADLIMLALGTHEPNFLILRDVVDTDNLKRTCTRCGHLRVSSEYRTGTVDPFTTRHEDQG
GIDCPFYPGSSLRPVAFRSPFQFLHVSRLREYLQREFDAADVIFERAIDDFVFLTFLVGN
DFLPHIQCLDIREDAVIRMIYFYKQLKRSRKIGFLTTGSDVNMEDLHIFLKELAEQEARI
FRARASGKLNARHSQISEAPDTKDETPGERAIREYFQFFKRDDKRMIKDAIDDYCNLHDK
PLPPTVVAVKHILIKYELEKPGYAQRYYLGIGLMDDFPETNQESDTFKAELRKRIQTMCY
HYIDGLIWVFRYYFLPKVEDWGWYYPYHHSPLLADLASASQTYTRTWKQHTVSNRPFNPY
EQLLAVMPPASAALLPPVMRCLMTDPASILNKFYPSLIKCDLSEKTALWKGVLLLPFINS
SELISAAQKSYDQLTPLEQQRNRLSDPIILIHKDHPGFALFKAILDDQPIPSSFSSVVVL
DKVEKLGERERKRFYIQKPNRQLNLLAGYYTVSQTDFFKYGSSVAHILAVAHNNNYLVQF
CKELEQDAVDARGQLDPCAVKTLYNLEDLSAITNQTIALRFISPRIPAQWLNATCYRNSA
IMRKVVTDSVWKGGIGARERQYNSLIGMNTEKDERGGAAGSVPLSSPTSATGVVERARAL
GF
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttccatcgttcttcaggtggatagtgcagcgttacggtagcgttatagacaat
gtcattgaagcactcccagacacatacgaagccaacatagatggcggcgcgcttcctctt
ggctttgcaatagataatctttacttcgatacaaatgggctcatccacccatgtttccac
cccgaggggcgacctcagccagaaacagaagcagaagtgttcgaggagatcttccaagtc
atagatagggtcgtttcgatctgtagaccgcggcgtcttctataccttgccgtcgacggg
cctgctcctcgtgcaaagctcaaccaacagcggagcaggcgttttatggcggcgtatgag
cggcagattaaacagcgcgcccaagagcgaaggctcatgaatatgaatcttggcgacgca
gagcccagcttgaaaaagctaagctttgaagaaggcaatgccatggatacttctacagag
aatgtccttgattccaacgccattacaccaggaactcccttcatgtctcgcctctcggtg
gcactaaagtactatgttgcaaatagacaggcaaacagcaagttatggcgccaccttacg
gttctctatgcagatgcatggtctcctggggagggggagcacaaaataatgagctttgtc
aggatccagcggtcccaacctggatatgacccatgcactgtgcattgcatatacggcctt
gacgcagacttgataatgcttgccttaggtactcatgaacccaatttccttattcttcga
gatgtggtggatacggataatcttaagcgcacctgcacgcgttgtgggcatctgcgggtt
tccagtgagtatagaacagggacggtggatcctttcactacacgtcatgaagaccaagga
gggatagactgtcccttctaccccgggtcgtctctacggccagtggcgttccgcagcccc
tttcaattcctacatgttagcaggcttcgggagtacttacaacgcgaatttgatgcggca
gatgtcatatttgaacgggccatcgacgattttgtgtttcttacctttcttgttggtaat
gatttcttgccccacattcagtgtctcgacattcgagaggacgcagtgatcagaatgata
tacttctacaagcaacttaaaagatcaagaaagataggattcttgacgaccgggtcagac
gttaatatggaagaccttcacattttcctaaaagaactggcagagcaagaagcacgaata
tttagggctcgagccagtggaaaactcaatgcgcgacactcgcaaataagtgaggcacca
gacactaaggacgaaacccctggagaacgtgctattagagagtacttccagtttttcaag
agggatgacaaaagaatgattaaagatgcaatagatgactactgtaatttgcacgataag
cctctccctccgacggtcgttgcggttaagcatatattgataaagtatgaacttgagaag
cctggctatgcacagcgttattatctgggaatcgggcttatggatgacttcccagaaact
aaccaagaatcggataccttcaaggcagagttaagaaagcgcattcagacgatgtgctat
cattatatagatgggttaatttgggtctttcggtactactttctgcctaaggtggaagat
tggggctggtattacccttaccaccattctcctctactggctgatctggcatcggcatct
cagacgtatacccgtacctggaaacagcatacagtgtcaaatcggcccttcaatccttat
gagcagcttctagctgttatgcctcctgcaagcgcagcacttctcccacctgttatgaga
tgtctgatgacagatcctgcctctattcttaataagttctatccctcgctcattaaatgc
gatctcagtgagaagacggccctttggaagggggtccttttacttccgttcataaactcc
tctgagttgatttctgcggcacaaaaaagttatgatcagctcacacctctagagcaacaa
agaaatcggctctcggacccaataattttgatccacaaggatcatcccggatttgctcta
tttaaggccatattagatgatcagcccattccctcgtccttcagctcagttgtggtatta
gataaggtagaaaagctcggagaaagggaacgcaaaagattctatattcaaaaacccaac
aggcagctcaatcttttggcgggttactatactgttagccaaacagacttctttaaatat
ggaagtagcgttgcacatatattagcggtcgcacacaataataactacctagtacagttc
tgtaaagagctggagcaagatgcagttgatgctcgcggacagctagatccttgtgctgtt
aaaacactttataatctcgaagacttatcagctataactaaccaaaccatagctttgcgc
tttataagtccgcgtataccagcacagtggctgaatgctacatgttacaggaattctgcc
atcatgcgcaaggttgtcacagactctgtctggaaaggaggaatcggcgcccgtgagcgg
cagtacaactctctaataggcatgaatactgagaaggatgagaggggtggagccgccggg
tctgtacccttgtcttctcctacatcggcgacaggggttgtggagcgagcgcgggcgctg
ggtttctag
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