Glaciimonas sp. PAMC28666: JQN73_22265
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Entry
JQN73_22265 CDS
T07066
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
glc
Glaciimonas sp. PAMC28666
Pathway
glc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
glc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JQN73_22265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
glc03019
]
JQN73_22265
03009 Ribosome biogenesis [BR:
glc03009
]
JQN73_22265
Enzymes [BR:
glc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JQN73_22265
Messenger RNA biogenesis [BR:
glc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JQN73_22265
Ribosome biogenesis [BR:
glc03009
]
Prokaryotic type
rRNA helicases
JQN73_22265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
DbpA
Helicase_C
ResIII
CMS1
AAA_19
UvrA_inter
adh_short
Motif
Other DBs
NCBI-ProteinID:
QRX82736
LinkDB
All DBs
Position
complement(5198445..5200799)
Genome browser
AA seq
784 aa
AA seq
DB search
MSETPIPLFADLNLSEPLLRVLKEVGYESPSPIQAATIPILLANRDVLGQAQTGTGKTAA
FALPILSRIDIKQTTPQALVLAPTRELAIQVAEAFQRYAAHIPGFHVLPIYGGQSYEPQL
RALRRGVHVVVGTPGRVIDHLDKNTLDLSQLKTLVLDEADEMLRMGFIDDVENILQKTPA
TRQTALFSATMPSVIRRIAKTYLRDPSEIAIVAKTGTADNIRQRYWLVSGMQKLEALTRI
LEAETFDGMIIFSRTKLGTEELASKLQARGFSAAAINGDIQQAQRERTIQQLKDGRIDIL
VATDVAARGLDVERISHVVNYDVPHDPESYTHRVGRTGRAGRSGEAILFITPREKSLLKA
IERATRQPIEPLILPSIQAVNDVRIAKFKSQIGEMLALGGLEQFRTIIEEYETENNVPAI
EIAAALAKMARGNVPLLIDKNQRETSSASSWSDERSSHAGKFERSDRGERGERPERFERP
ERSERPAAPRRERTDRGTDVGMQTFRIEVGHTHGVKPGNIVGAIANEAGLDSKNIGRIEI
FDNYSVLDLPNDLPSELLEHLKTVWVAGQQLRISTDGGASDSAHKSSTPAPAQAASRAPF
SATSARENSPPAERFERKERPESEGHVARSEFPKKERNDRKPDAGMERFRIEVGTEHGVK
AGNIVGAIANEASLDSKHIGRIEIFDDHSTLDLPEGMPKELLEHLKTVWVAGQQLRISHA
GERSGGGDKFAGSKSFAAPKTGGDRRVGEKLSDKPPFKNKNDFNNRSDPAKAKPKAHRKG
PKPA
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaacacctattcccttatttgccgatttgaacctcagtgagccgctgctgcgc
gtgctgaaagaagtcggatatgagtccccgtcgccgattcaggccgccaccataccgatc
cttttagccaaccgcgacgtgttggggcaagcgcaaaccggaaccggcaagaccgccgca
tttgcgctcccgattctgtcgcgtattgacattaaacaaacaacaccgcaagcgctggta
ttagcgcctacgcgcgaactcgccattcaggtagcggaagcatttcaacggtatgccgcg
catatccccggctttcacgtgttgcctatttacggtggtcaaagctatgagcctcagtta
agggctttacgccgcggcgtccacgtcgtggtcggcacaccaggccgagtgattgaccat
ttagataaaaatacgctggatttgtctcagctgaaaaccctggtactggacgaagcggat
gaaatgcttcgtatgggctttatcgacgacgtagaaaatattcttcagaagacgcccgcg
acgcgtcagacagcgctattctccgctacgatgccatcggtcatcagacgcatcgcaaaa
acctatttgcgcgatccatcggagatcgccatcgtcgccaaaacgggcactgcggataac
attcgtcagcgctactggttggtgagtggcatgcaaaagctggaggctcttacccgcatt
ctggaggccgaaacgtttgatggcatgatcattttttcccgcacaaaattgggcacagaa
gaactagccagcaagttacaagcgcgcggattttctgctgcggccatcaatggcgacatc
cagcaagcacaacgtgaacgcactattcaacagttgaaagatggtcgcatagatatcctg
gtcgccaccgacgttgcagcgcgtggccttgacgtggagcgtatcagtcacgtcgtcaat
tatgacgtgccgcatgatcctgaaagctatacacaccgcgtaggacgcaccggtcgcgca
ggacgtagcggggaggcgatcttatttattacaccgcgtgagaaaagccttctgaaagcg
attgagcgcgctacccgccaaccgattgaaccgctaatattgccgagtattcaagccgtc
aacgacgttcggattgccaagttcaaatcccagataggtgagatgctggcccttggcggg
ttggaacaatttcgaaccattatcgaagaatacgaaaccgagaacaatgttcccgcgatt
gagatcgctgcagcactcgccaaaatggcgcgtggaaatgtccctctattgatagacaaa
aatcagcgcgagacatccagtgcctcttcctggtcggatgagcgctcttcgcatgctggt
aaattcgagcgatctgaccgcggtgaaaggggagaacgtccggaacgatttgagcgcccg
gaacggagcgagcgccccgcagcgccgcgcagagagcgtaccgaccgcggcaccgatgtc
ggcatgcaaaccttccgcatcgaagtgggccatacgcatggtgttaagcccggcaatatt
gtcggcgcgattgccaacgaggcagggttagattccaaaaatatcggacgcatcgaaata
ttcgataactatagtgttctggatttgccgaatgacttgccgagcgagctccttgaacat
ctcaagacggtatgggtagcaggtcagcaattacgcattagtacagatggcggagcctct
gattctgcccataaatcgtccactccagcgccagcacaggcagcgtcaagagcacctttt
tctgccaccagtgcaagggaaaatagtccgccagctgaaagatttgaacgtaaagagcgc
cctgaatcggagggccacgttgcccgatccgagttcccaaaaaaagagcgcaatgatcgc
aaacctgacgccggtatggagcgtttccgtatcgaagttggtaccgagcatggcgtaaag
gccggtaatatcgtgggcgctatcgccaacgaggccagcctggattccaagcatattggt
cgtatcgaaatatttgatgatcacagcaccctggatttgccggaaggcatgccgaaagaa
ctgctcgaacatctaaaaactgtgtgggtcgctggtcaacaacttcgtattagtcatgcg
ggtgagcgctccggtggcggcgataaatttgcgggtagcaaatcttttgcggcaccgaaa
actggcggtgaccgacgtgttggtgaaaagctgagtgacaagccaccgtttaaaaataag
aacgatttcaacaaccgttctgatccagctaaagcaaaacctaaggcacatcgcaaaggt
ccaaaaccggcgtaa
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