Gloeobacter kilaueensis: GKIL_2516
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Entry
GKIL_2516 CDS
T02885
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
glj
Gloeobacter kilaueensis
Pathway
glj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
glj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GKIL_2516 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
glj03400
]
GKIL_2516 (mfd)
Enzymes [BR:
glj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GKIL_2516 (mfd)
DNA repair and recombination proteins [BR:
glj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GKIL_2516 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGY58762
UniProt:
U5QIE7
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All DBs
Position
2661667..2665131
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AA seq
1154 aa
AA seq
DB search
MPLTALVQSLKGSPFVEEIAQRLLKSATVRLQGGNRVARGIAASALARRQGTPLLVVTAN
LEEAARWSAQLETMGWESVYLYPSSEATPYEPFDPEEEVSWGELQVLAELTQHSEGNWAI
VCTSRALQPHLPPPEDLSDYCLTIEAGQTLTIERVSAELARLGYSRVPQVEGEGQFSRRG
DILDCFPVSAEMPVRIEWFGDELEKIREFDPASQRSLDPVDGVSITPVGFGAVVLPELQR
QLTPARVAELPESWQQVVRTDIQENRVPEGLRRWLGLAFDPPASLVDYLPTRLTVCLDEP
EQIRSIDQRWFEAADEQWLKQPVGPPLHIAFEAIEALLKDRYSLLELRELASEGGGFQLG
GRPLPSVPHQFGTLAEHLRQYRAQGLQIWMLSAQPSRAVALLAEHDCPAQFIPNPQDQPA
LEKAQTSRTPIALKYSGLAEMEGSVLSTLRTVLVTDREFFGQRVLATPNFVRKRRRAGSR
QIDLDKLNPGDFVVHRNHGIGRFLKLEKLAVSGSAREYLVIEYADGILRVAADQMNSLSR
YRSTGGSVQLSRMGSKSWEKTKQKVRKSIQKIAFDLLELYARRSQQKRLAFPPDQPWQRE
MEDSFPYPLTPDQARAIQEVKADMESERPMDRLVCGDVGFGKTEVAIRAAFKAVTSGLQC
AVLVPTTVLAQQHYHTFKERFAPYPISVGLLNRFRTPAEKKDLLARLATGELDLVIGTHQ
LLGSGVHFRNLGLLIIDEEQRFGVAQKEKIKTLKTQVDVLTLTATPIPRTLYMSLSGVRE
MSLITTPPPSRRPIKTHLAPYDPEHVRTAILQELGRGGQVFYVYNRVEDIQQVAARLQAM
LPMAKIGVAHGQMDEGELESTMLAFSGGEYDILVCTTIIESGLDIPRVNTILVENAHQFG
LAQLYQLRGRVGRSGVQAHAWMFYKQEDSLTDEARKRLRAIQEFTQLGSGYQLAMRDMEI
RGVGNLLGAEQSGQVNQIGFDLYMELLEEAIQEIRGRKLPKVEDTQIDLRVTAFIPADYI
VDLEQKMRAYRQVALATDRHQLQQVALEWTERYGPLPVAAQQLLRVMELKQVARALGFSR
IRPEATNVVLETPMEAPAWEQIAQSLPAEVRGRFFYQPGKVTVRNLGILTSAQQLENLVQ
WLDKVQLPSLEIAV
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgccgctcaccgcactcgttcagagcctgaagggctcgcccttcgttgaagaaattgcc
cagcgccttctaaaatctgcaaccgttcgcctgcaggggggcaaccgggtcgcccgtggc
atcgccgcctccgccctcgcccgccgccagggcacgccgctactggtcgtcaccgccaac
ctcgaggaggcagcgcgctggagcgctcagctggagacgatgggctgggaatcggtctat
ctttatccgtcctcggaggcgacgccctacgaaccttttgatccggaggaggaggtgagc
tggggagagttgcaggtgttagccgaactcacccagcacagcgagggcaattgggcaatt
gtctgcaccagccgcgccctgcagccccacctgccgccccccgaagatctcagcgactat
tgcctgacgatcgaggccgggcagaccctcacgatcgagcgggtgagtgctgagctggcc
cggttgggctacagccgcgtcccccaggtcgaaggggagggccagttctcccggcgcggc
gacatcctcgattgcttcccggtctcagccgagatgccggtgcgcatcgagtggttcggc
gacgaacttgagaagatccgcgagttcgacccagcgagccagcgctcgctcgatccggta
gatggcgtatcgattactccggtgggctttggagcggtggtcctgcctgagttgcagcgg
cagctcaccccggcgcgggtggcggagttacccgaaagctggcagcaggtggtgcgcaca
gacattcaagaaaaccgcgttccagaagggctgcgccgctggctgggcctcgccttcgat
ccgcccgcctcgctggtggactatctgcccactcgcctgactgtctgtctcgacgagccc
gagcagatccgttctatcgatcagcgctggttcgaggccgccgacgagcagtggctcaag
cagccggtcggcccgcctctgcacatcgccttcgaggcgatcgaagcgctgcttaaagac
cgctattcgctcctcgaactgcgggaactggcgagcgagggcggtggttttcaactggga
ggccggcccctgcccagcgtcccccaccagttcggcaccctcgcagaacatctccggcag
taccgcgcccagggactgcagatctggatgctctccgcccagcccagccgggcggtggca
cttttggccgagcacgattgcccggcccagttcatccccaatccccaggatcagcccgcc
ctcgaaaaagcgcagaccagccgcacgccgatcgccctcaagtactcgggcctcgcggag
atggaaggcagcgtactatcgacgctgcgaaccgtactggtcaccgatcgcgagttcttt
ggccagcgggtgctcgccacccccaacttcgtgcgcaagcgccgccgggccggctcacgg
cagatcgacctcgacaagctcaaccccggcgattttgtcgtccatcgcaaccacggcatc
ggtcgctttctcaagctcgaaaaattggcagtcagcggctccgcccgcgagtacctggtg
atcgagtatgccgacggcatcttgagggtggccgccgaccagatgaattcgctctcgcgc
taccgctccaccggcggcagcgtgcagctctcgcgcatgggctccaagtcctgggagaag
accaagcaaaaagtccgcaagtcgattcaaaagatcgccttcgacctgctcgaactctac
gcccgccgctcccagcaaaagcgcctcgccttcccgcccgaccagccctggcagcgggag
atggaagattcttttccctatccgctcacccccgatcaggccagggcgattcaggaagtc
aaagccgacatggagtcggagcgaccgatggaccgcctggtgtgcggcgacgtgggtttt
ggcaagaccgaggtagcgatccgggccgccttcaaggccgtcacctccggcctgcagtgc
gccgtgctcgtgcccacgaccgtccttgcccagcagcactaccacaccttcaaggagcgc
ttcgccccctacccgatctccgtcggtctgctcaaccgctttcgtacccccgccgaaaaa
aaagacctgctcgcccgcctcgccacgggtgaactggatctggtgatcggcacccaccag
ctactgggaagcggtgttcactttcgcaatctggggctgctcatcatcgacgaggagcag
cgctttggcgtcgcccaaaaagaaaagatcaagaccctcaagacccaggtggacgtgctc
accctgacggcgacaccgatcccgcgcacgctctatatgtcgctgtcgggcgtgcgggag
atgagcctcatcaccaccccgccccccagccgccgcccgatcaagacccaccttgccccc
tacgatcccgagcacgtgcgcacggcgatcctccaggagttgggccggggcggccaggtc
ttctacgtctacaaccgggtagaagacatccagcaggtggcggcccgattgcaggcgatg
ctgccgatggccaaaatcggcgtcgcccacggccagatggacgagggcgaactcgaatcg
acgatgctcgccttctcaggcggcgagtacgacatcctggtttgcacgacgatcatcgag
tcgggcctcgacattccccgcgtcaacacgatcctcgtcgagaacgcccaccagttcggc
ctcgcccagctctaccagttgcgcgggcgggtgggccgatcgggggtgcaggcccacgcc
tggatgttctacaagcaggaggacagcctcaccgacgaggcgcgcaagcgcctgcgggcg
attcaagaatttacccaactcggctccggctatcagcttgccatgcgcgacatggaaatt
cgcggcgtcggcaacctgctcggagccgagcagtccggccaggtaaaccagattggcttt
gatctatatatggaacttttagaagaagcgatccaggagatccggggccgcaaactgccc
aaagtcgaggatacccagatcgacctgcgcgtcaccgcctttatccccgccgattacatc
gtcgatctcgagcaaaagatgcgcgcctaccgtcaggtggctctggccaccgaccgccat
caattgcagcaggtggccctcgaatggaccgagcgctacggccccctgcccgtcgctgcc
cagcaactgttgcgcgtcatggaactcaagcaggtcgctcgcgccctgggcttctcgcgc
atccgaccggaggcgaccaacgtcgtccttgaaaccccaatggaggcaccggcctgggag
cagattgcccagtcgctacccgccgaggtgcgcggtcgcttcttttatcagccgggcaaa
gtcaccgtgcgcaaccttggcattctcaccagcgcccaacagctcgaaaacctcgtgcag
tggctcgacaaggtacaactgccctcgctggagatagccgtctag
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