Glaciihabitans sp. INWT7: F1C58_05485
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Entry
F1C58_05485 CDS
T06751
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
gln
Glaciihabitans sp. INWT7
Pathway
gln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1C58_05485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gln03021
]
F1C58_05485
03019 Messenger RNA biogenesis [BR:
gln03019
]
F1C58_05485
Transcription machinery [BR:
gln03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
F1C58_05485
Messenger RNA biogenesis [BR:
gln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
F1C58_05485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
NACHT
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QNE46414
UniProt:
A0A7G6Z6P9
LinkDB
All DBs
Position
1105390..1107672
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AA seq
760 aa
AA seq
DB search
MTDLTVRAAGTDSIALAKLRLPELQALAAELGLSGSSKLRKGELVDAISEIQNSNASPVA
SGSVADAPVSDAPVADAAVTDAPVVDAPVAKKRASRRASTSIVDAAAAEAPVIESTQREP
RRTAAARSAGKAEPKSVTRHVNGAASGLDRIPGQEAERAAVADSQQTGGLDRIPGQEAER
LALADAALSAGLDRIPGQEAERAAVADSQQADGLDRIPGQEAEAEAQADDSQPSRNSRNR
NRNRGGDRQQGDASGNGQSNQAAQSNQSNQSNQNGQAAQNGEQSDGQRANGRNANNRNQQ
NNQGGGQQNGNSRQQGNDRQQGNDRQQQNNNDRNGNNDRNQQQLLEDDDRGGRNRYRDRK
RRGAGGNDDFEPEITEDDVLIPVAGILDVLDNYAFVRTSGYLPGNNDVYVSLGQVKKYNL
RKGDAVVGAIRQPRENDNSGRQKYNAIVKIDSINGLPIEQAADRVEFGKLTPLYPSERLR
LETESGKLTTRIIDLVSPIGKGQRGLIVSPPKAGKTLVLQAIANAIAKNNPEVHLMVVLV
DERPEEVTDMQRTVKGEVIASTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITR
LGRAYNLAAPASGRILSGGVDSSALYPPKRFFGAARNIEDGGSLTILATALVETGSKMDE
VIFEEFKGTGNMELRLSRQLADKRIFPAVDVNASGTRREEMLMGVDETKINWKLRRALAG
LETQQALELVLTQLKDTSSNVEFLMKIQKSLPGASGSKED
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
gtgactgacctcactgtccgtgccgcaggtacagactccatcgccctcgccaaactccgc
cttcctgagctccaggctctcgcggcagagctcggcctcagtggctcgtccaaacttcgt
aaaggagaactcgtggatgccatctccgagatccagaacagcaacgcaagccccgtcgcg
tccggatcggtcgctgacgcaccggtatctgacgcaccggtagccgacgcagcggtcacc
gatgcgccggtcgtcgacgcaccggtcgccaagaagcgggcctcgcgccgcgccagcacc
tcgatcgtggatgctgccgccgccgaagctcccgtcatcgaatcgacacagcgcgaaccg
cgccggacggcagcagcccgatccgccgggaaggcggagccgaagtcggtcacccgccac
gtgaacggcgcggcgagcggtctcgaccgcatcccgggccaggaagccgagcgggccgcc
gtcgcggactcgcagcagacgggcggactcgaccgaatccccggccaggaagccgagcgc
ctcgctctggccgacgccgcactctccgccggtctcgaccgcatccccggccaggaggcc
gagcgggctgccgtcgcggactcgcagcaggccgatggtctcgaccgcatcccgggccag
gaggccgaagccgaggcgcaggccgatgactcccagccctcacgcaactcgcgcaaccgc
aaccgaaaccgcggcggagatcgccagcagggcgacgcctcgggcaacggccagagcaac
caagctgcccagagcaaccagagcaaccagagcaaccagaacggccaggctgcccagaac
ggtgagcagtccgatggacagcgcgccaacggtcgcaatgcgaacaaccgcaaccagcag
aacaaccagggtggtggccagcagaacggcaactcccgccagcagggcaacgaccgccag
cagggcaacgaccgccagcagcagaacaacaacgaccgcaacggcaacaacgaccgcaac
cagcagcagctgctcgaggacgacgaccgcggcggtcgcaaccgctaccgtgaccgcaag
cgccgtggcgccggcggtaatgacgacttcgagcccgagatcaccgaggatgacgtgctc
atcccggttgccggcatcctcgacgtgctcgacaactacgccttcgtgcgcacgagcggc
tacctgccgggcaacaacgacgtctacgtctcgctcggccaggtgaagaaatacaacctg
cgcaagggcgatgcggtggtcggagccatccgccagccgcgcgagaacgacaactccggt
cgccagaagtacaacgcgatcgtgaagatcgactcgatcaacggacttcccatcgagcag
gccgcggaccgtgtcgagttcggcaagctgaccccgctctacccctcggagcgcctgcgc
ctcgagaccgagtccggcaagctcaccacccgcatcatcgacctcgtgtcgccgatcggc
aagggtcagcgcggcctcatcgtctcgccgcccaaggccggcaagacgctcgtgcttcag
gccatcgccaacgccatcgccaagaacaaccctgaggtacacctcatggtcgtgctggtc
gacgagcgtccggaggaagtcaccgacatgcagcgcacggtcaagggtgaggtcatcgcc
tccaccttcgaccgccccgcagaggaccacaccaccgtcgccgagctcgccatcgagcgc
gcaaagcgtctcgtggagctcggtcacgacgtcgtcgtgctgctcgactcgatcacccgc
ctcggccgcgcctacaacctggctgctccggcctccgggcgcatcctgtccggcggtgtc
gactcctcggctctctacccgccgaagcgtttcttcggcgccgcacgcaacatcgaggac
ggtggatcgctcacgatcctcgccactgcgctcgtggagaccggatccaagatggacgag
gtcatcttcgaggagttcaagggcaccgggaacatggaacttcgcctgtcacgtcagctc
gctgacaagcgcatcttcccggccgtcgacgtgaacgcctccggcacccgtcgcgaggag
atgctcatgggcgtcgacgagacgaagatcaactggaagctccgtcgggcactcgccgga
ctcgagacccagcaggccctcgaactcgtgctcacgcagctgaaggacacctcgtcgaac
gtcgagttcctcatgaagatccagaagtcgcttccgggcgcatccgggtcgaaagaggac
taa
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