Glaciihabitans sp. INWT7: F1C58_12470
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Entry
F1C58_12470 CDS
T06751
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gln
Glaciihabitans sp. INWT7
Pathway
gln03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F1C58_12470 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gln03400
]
F1C58_12470 (mfd)
Enzymes [BR:
gln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F1C58_12470 (mfd)
DNA repair and recombination proteins [BR:
gln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F1C58_12470 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
DUF3638
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QNE47634
UniProt:
A0A7G6ZA69
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All DBs
Position
complement(2589021..2592632)
Genome browser
AA seq
1203 aa
AA seq
DB search
MILSGLNTALLRAHTFENAVSWGSRSADFSLVDGLRAPLLASLLKARTVKAKAPQALLAI
VATGRDSESLRSALASVMPDAQVVEFPAWETLPHERLSPSAETVGKRIHALRTMQRWQDA
PQRDLVIVASVRAALQPLADNLTSIEPLALSAGGRGYNLAGISRQLVDLAYSRVDMVTRR
GEFAVRGGILDVFAPVAEHPWRVEFFGDEVEQIRQFSVADQRSMDEPIPTVELPPSRELL
LSEAVKQRAREMQHEFPSLSQMLAKISEGIPVDGMESLAPALADRLVPLTHYLPKDAAIA
VLAPERVASRAVSLVETNREFLSAAWNAATAGAEAPIDLDSGDFLSISALRDAAGARNWW
TLSSFDSGAAEPETVTTATSELRDGDHYIRIDATTVPTFQGQADGAIDYVGDKLKDGWTV
AVVAAGHGLVERAAEALGEHGFAARMVEEFPAETETGVAYLLCASVEHGFELPETKFALL
SESEFYGRAAGYDTRQVKKLASRRKNVVDPLQLKAGDFVVHETHGIGRFAELVQRTVSTG
GRNAVKNNREYLLVEYAPSKRGYPNDKLYVPTDQLDLLTRYVGGEAPALSKMGGSEWAAQ
KGRARKAVRDIAVELVKLYSARMASRGHAFPPDTPWQRELEEAFPFAETPDQLTTIDEVK
ADMERPIPMDRLISGDVGYGKTEVAIRAAFKAVQDGKQVVMLVPTTLLVKQHMETFAERF
AGFPVHLRALSRFQTDKESKETIEGMADGTVDVVIGTHRLLSPSIVLKDLGLVIIDEEQR
FGVEHKDALKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTFVGPY
NDKQVGAAIRRELLREGQVFFVHNRVSSISRVASQLAELVPEARIAVAHGQLPEHVLEQV
MVDFWERKFDVLVSTTIIETGLDIANANTLIIDRADKYGLSQLHQLRGRVGRGRERAYAY
FLYDADKPLGEVAHDRLATIAANNELGAGMQVALKDLEIRGAGNLLGGEQSGHIAGVGFD
LYLRMIGEAVSTFRGEVAEGQTELRLELPVDAHIPEEYVESERLRLEAYQKLSTASSPAA
SPDSIDRVLEELTDRYGEPPVQVLNLIAVSRLRRMAQKAGLSEVVTAGGNLRVASMELLD
SIQIRLQRMFPGARYFAQTHSVSVPLPVRQGIPLADADLIEWTGQLLVAIFGAELKVDAP
LVE
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
gtgatcctttcgggcttgaatactgcgcttttgcgcgcccacacgttcgaaaatgccgtc
tcctggggctcccgcagcgcagatttctctctggtcgacgggcttcgcgcccctctgctc
gcctcgctgttgaaggctcgaaccgtcaaggcgaaggcgccacaggcgctgctcgccatc
gtggcgaccggtcgcgattccgagtcgctccgctcggcgctcgccagcgtgatgccggac
gcccaggtcgtcgagttccccgcttgggagaccttgccgcatgagcgcttgagccccagc
gccgagaccgtcggcaagcgcatccacgccctgcgcaccatgcagcgctggcaggatgcc
ccgcagcgcgacctggtcatcgtcgcgagtgtgcgtgcggcgctccaacctctcgccgac
aacctcaccagcatcgagccgctcgccctctctgccggtggacgcggttacaacctggcg
ggcatcagccgtcagctcgtcgacctggcatattcccgggtcgacatggtcacccgccgc
ggcgaattcgcggtgcgcggcggtattctcgacgtcttcgctccggtggccgagcatccg
tggcgcgtggagttcttcggtgacgaggtcgagcaaatccgccagttctcggtcgccgac
cagcgttcgatggacgagccgattcccacggtcgaactcccacccagccgcgagctgctg
ctcagcgaggccgtgaaacagcgggcccgggagatgcagcacgagttcccgagcctcagt
cagatgctcgccaagatcagcgagggaattcccgtcgacggcatggagtcgctggcgccc
gcgctcgccgacaggcttgttccgctcacgcactacctgccgaaggatgccgcgatcgcg
gtgctcgcgccggaacgggtcgcgagccgcgccgtcagcctggtcgagacgaaccgcgag
ttcctcagcgccgcgtggaacgccgcgaccgcgggggccgaggcgccgatcgatctcgat
tccggcgacttcctcagcatcagcgcgctgagggatgccgcgggcgcgcgtaactggtgg
acgctgagctccttcgacagtggtgcggcagaacccgagaccgtcaccaccgcgacctcc
gagctccgtgacggtgaccactacatccggatcgatgccacgacggttcccaccttccag
ggccaggccgacggggcgatcgactacgtcggcgacaagctgaaggacggctggaccgtc
gcggttgtcgcggccggccacggcctggtcgagcgtgcagcggaggccctcggcgagcac
ggtttcgccgcccgcatggtggaggagttcccggccgagaccgagacgggcgtcgcgtac
ctgctctgcgcatccgtcgagcacggcttcgagttgccggagaccaagttcgctctgctc
agcgagagcgagttctacggccgcgccgccggctacgacacccgccaggtgaagaaactc
gccagccggcgcaagaacgtggtcgacccgctgcagctcaaggccggcgacttcgtcgtg
cacgagacgcatggcatcggccgattcgcggagctggtgcagcgcaccgtctccaccggc
ggacgcaacgccgtcaaaaacaaccgcgagtacctcctggtcgagtacgcaccgtcgaag
cgcggctaccccaacgacaagctctacgttcccaccgaccaactcgacctgctcacccgc
tatgtcgggggagaagcgcccgcgctcagcaagatgggcggatccgagtgggcggcgcag
aaaggacgggcacgcaaggcggtgcgagacatcgccgtcgaactcgtgaagctctactcg
gcccgtatggcgagccgcgggcacgccttcccgcccgacaccccgtggcagcgcgagctc
gaggaggctttcccctttgcggagacccccgatcagctcaccaccatcgacgaggtcaag
gccgacatggagcggccgatcccgatggaccgtctcatctccggcgacgtgggctatggc
aagaccgaggtcgccatccgcgccgccttcaaggccgtgcaagacggcaagcaggtcgtc
atgctcgtgccaaccaccctgctcgtgaagcagcacatggagaccttcgccgagcgcttc
gccggcttccccgtgcacctgcgcgcgctcagccggttccagaccgacaaggagtccaag
gagacgatcgagggcatggcggatggcactgtagatgtcgtcatcggcacccaccgcctg
ctcagccccagcatcgtgctcaaggatctcgggctcgtgatcatcgacgaggagcagcgg
ttcggtgtcgagcacaaggacgcgctgaagaagctcaagaccaacgtcgacatcctcgcg
atgagcgcgacgcccatcccgcgcacgctcgagatggcggtgaccggcatccgtgagatg
tcgactctcgcgacaccgccggaggaccggcatccgatcctcacgttcgtcggaccctac
aacgacaagcaggtcggggccgccatccgtcgcgaactgctgcgcgagggtcaggtcttc
ttcgttcacaaccgcgtctcgtcgatcagccgggtcgcctcccaactggccgagctcgtg
ccggaggcccgcatcgcggtggcccacggacagctgcccgagcacgtgctcgagcaggtg
atggtcgacttctgggagcgcaagttcgacgtgctggtctccacgaccatcatcgagacc
gggctcgacatcgccaacgcgaacaccctcatcatcgaccgcgccgacaagtacggcctc
agccagcttcaccagttgcgtggacgggtcggtcgtggaagggagcgcgcctatgcctac
ttcctctacgacgccgacaagccgctcggggaggtcgcgcacgaccgtctagcgacgatc
gccgcgaacaacgaactcggcgcgggaatgcaggtggcgctgaaagatctcgagatccgc
ggggccggcaacctgctcggtggcgagcagtcgggccacatcgccggagtcggctttgac
ctctacctccgcatgatcggcgaggccgtgtcgaccttccgcggcgaggtcgcggagggc
cagaccgaactgcgcctcgaactgccggtggatgcccacatccccgaggaatacgtggag
agcgagcgtctgcgcctcgaggcgtaccagaagctgtcgaccgcatcctcgcccgcggca
tctccggattcgatcgatcgggtgctcgaggagctcaccgaccgctacggcgaaccgccc
gtgcaggtgctcaacctcatcgccgtctcccggctgcggcggatggcgcagaaggccggt
ctctccgaggtcgtcacggcgggcggcaaccttcgcgtggcatccatggagctgctggac
tcgatccagatccggctgcagcggatgttcccgggagcccgctacttcgcccagacccac
tcggtctcggttccgctccccgtgcgccagggcatcccgctggccgacgcggacctcatc
gagtggaccggccaactgctggtcgccatcttcggcgccgagctgaaggtggatgctccg
ctggtcgagtag
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