Glutamicibacter sp. ZJUTW: F0M17_04155
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Entry
F0M17_04155 CDS
T06225
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
glu
Glutamicibacter sp. ZJUTW
Pathway
glu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
glu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F0M17_04155 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
glu03400
]
F0M17_04155 (mfd)
Enzymes [BR:
glu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F0M17_04155 (mfd)
DNA repair and recombination proteins [BR:
glu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F0M17_04155 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QEP06490
UniProt:
A0A5C2FMJ6
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All DBs
Position
873993..877601
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AA seq
1202 aa
AA seq
DB search
MSLSGLHDFLREEPSFRRIGQSAAHDYHARSEELEIAAPQGMRPILSAHISQALSRSEHP
GVTLIVTATGREAEEVSSSLGAFLPAGQIAEFPSWETLPHERLSPRSDTVGRRLEVLRRL
HDRDESLNIIIAPIRAVLQPLVAGLGELRPVVLELDAEPGFDNVIKDLAAAAYARVDMVT
HRGEFAVRGGIIDVFPPTLDHPVRIDFFGDQIDSMRYFAIADQRSTDDPGPTRIIATPCR
EMLITPQVMSRAANLKNQFPAAQEMLTKIAGGIAVEGMESLAPLLVDKMVPLLSLLPESS
IALVMEPERVRARAQDLNATNAEFLAAAWASASDGASAPLDLATAGSERKLATGDFASLA
ETVEHARAAKVSWWAITSLGADDELDLGAATIRVLAREPHGYQGDIEAMMEFIAGRVKDQ
WRFVVATEGPGPAARLSELFAEFKIPAHRVDDLSAEPTAGLIEITQATAGRGFVFEELKL
GLLTEADLLGRSSAYPNRKGRKLTVKRKRNAVDPLSLEAGDFIVHEQHGIGKFVELMARK
VNGSGKDAKREYLVVEYASSKRGAPGDRLFVPMDQLHMVTRYVGGEAPTLSKMGGSDWAS
TKSKARKAVKEIAGDLIKLYSARMASRGHAFAQDTPWQNELEEAFAFIETPDQLTAINEV
KSDMEKEIPMDRLISGDVGFGKTEIAVRAAFKAVQDSKQVAVLVPTTLLASQHYQTFTER
YSGFPVRVKTLSRFQTAKESKEILAGLKDGSVDIVIGTHRLLSKNVEFKNLGLVIIDEEQ
RFGVEHKEELKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERHPVLTYVGP
RSDKQISAAIKRELMRDGQVFFVHNRVSSIERVAAELRELAPEARVEVAHGKMSESRLER
IIQDFWEKKFDVLVSTTIIETGLDISNANTLIVDRANNYGLSQLHQLRGRVGRGRERAYA
YFLWDAEKPLGEIALERLKAVAAHNELGSGYQLAMKDLELRGAGNLLGGEQSGHIAGVGF
DLYLRLVGEAVADYKGEGEEEATEMKIDLPVNAHLPHDYVPGERLRLEAYRNIAQAETDE
ALAEVRDELVDRYGKLPVPVENLMRVAALRIRARAVGLHDIQQIGNHIKLAPAKIEDLPA
SRQVRLERLYPGAANKPALNSIFIPKPKTSPIGGRDLADGEILEWAEKLLYAIFEPTPAA
ND
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgagcctaagcggacttcatgatttcctgcgcgaagaaccttccttcaggcgcattggg
caaagcgccgctcatgactaccatgcacgcagcgaagaactggaaatcgccgccccgcag
ggcatgcgccccatcctctcggcgcacatcagccaggcactgagccgcagcgagcatccg
ggcgtgacgctgatcgtcaccgcgaccggccgcgaggcggaagaggtctccagctccctg
ggcgccttcctcccggcagggcaaatcgccgaattcccttcgtgggaaaccctgccccat
gaacgtctttcgccacgcagcgataccgtgggccgccggctggaagtgctgcgccggctg
cacgaccgggacgagagcctgaatatcatcatcgcgccaatccgtgctgtgctgcagccc
ttggtcgcaggcctgggcgaactgcgcccggtggtactggaactggacgccgagccggga
ttcgacaacgtcatcaaggacctggcggccgccgcctacgcccgcgtggacatggtgacg
caccgcggcgagttcgctgtgcgcggtggcatcattgacgttttccctccgacgctggac
catccggtacgcatcgacttcttcggcgaccagatcgactcgatgcgctacttcgccatc
gcagaccagcgctccaccgatgaccccgggcctacgcggatcatcgccacgccctgccgc
gaaatgctcatcaccccgcaggtgatgagccgggccgcgaacctgaagaaccagttcccg
gccgcccaggaaatgctcaccaagattgccggcggcatcgccgtggaaggcatggaatcc
ctggctccgctgctggtggacaagatggtgccgctgctctcgctgctgcccgaatcctcc
atcgcgctggtcatggaaccagagcgggtgcgcgcccgagcccaggacctgaatgccacc
aacgccgagttcctggcagccgcgtgggcctcggcctcggatggggccagcgccccgctg
gatctggccaccgccgggtctgaacgcaagctggccaccggcgacttcgcctcgctggcc
gaaacggtggagcacgcacgcgccgccaaggtctcctggtgggcgatcacctcactgggc
gccgatgacgaactggatctgggtgccgcgaccatccgcgtgctggcccgcgaaccgcac
ggctaccaaggcgacatcgaggcgatgatggaattcattgccgggcgggtcaaggaccaa
tggcgctttgtcgtggcgaccgagggaccgggcccggctgcccgcctctccgagctcttt
gccgaattcaagatcccagcgcaccgcgtggatgacctgtccgccgagccaaccgccggt
ctgatcgagatcacccaggccaccgccggccgagggttcgtcttcgaggagctcaaactg
ggcctgctcaccgaagcagacctgctgggccgctccagcgcctaccctaaccgcaagggc
cgcaagctcaccgtcaagcgcaagcgcaatgcggttgacccgctgagcctggaagcgggg
gacttcatcgtccacgagcagcacggcatcggcaagttcgttgagctcatggcccgcaag
gtcaacggctcgggcaaggacgccaagcgcgaatacctcgtggtggaatacgcctcctcc
aagcgcggcgcgccgggggaccggctcttcgtcccgatggaccagctgcatatggtcacc
cggtatgtcggcggcgaagcgccgaccctgtccaagatgggcggctcggactgggccagc
accaaatccaaggcccgcaaggcggtcaaggagatcgccggcgacctgatcaagctgtac
tcggctcgcatggccagccgcggccacgctttcgcccaggacaccccgtggcagaacgag
ctggaggaagccttcgccttcatcgagactccggatcagctcaccgccatcaacgaggtg
aagtccgatatggagaaggaaatcccgatggaccggctgatctccggcgacgtgggcttc
ggcaaaaccgagattgcggtgcgcgccgcgttcaaggcggtccaggactccaagcaggtg
gccgtgctggtgcccaccacgctgctggcctcccagcactaccagaccttcaccgaacgc
tactccgggttcccggtgcgcgtgaagacgctctcgcgcttccagactgccaaggaatcc
aaggagatcctggccgggctgaaggacggcagtgtggatatcgtcatcggcacccaccgc
ctgctgagcaagaacgtggaattcaagaatctgggcctggtgatcatcgacgaggaacag
cgtttcggcgtggagcacaaggaagagctcaagaagatgcgcacgaacgtggacgtgctg
gcgatgagtgccaccccgatcccgcgcaccttggagatgtcgctgaccggcatccgcgaa
acctccaccctggccaccccgccagaagagcggcatccggtgctgacctacgtgggtccg
cgcagcgacaagcagatttccgctgccatcaagcgcgagctgatgcgcgatggccaggtg
ttcttcgtgcacaaccgggtcagctccattgaacgggtggcggccgaactgcgcgaactg
gctcccgaagcccgcgtggaggtggcccacggcaagatgagcgaatcaaggcttgaacgg
atcatccaggacttctgggaaaagaaattcgatgtgctggtctccaccaccattatcgaa
acgggcctggacatttccaacgcgaacacgctgatcgtcgaccgggcgaataattacggc
ctgtcccagctgcaccagctgcgcggccgcgtgggccgtggccgcgagcgcgcctacgcc
tacttcctatgggatgcggagaagccgctgggcgagatcgccctggagcggctgaaggct
gtggccgcgcacaacgagctgggttcgggctaccagctggccatgaaggacctggaactg
cgtggagccggcaacctgctcggcggcgagcagtccgggcacatcgccggggtgggcttc
gatttgtacctgcgcctggtcggcgaggccgtggccgattacaagggggagggcgaggaa
gaagccaccgaaatgaagatcgacctgccggtcaatgcccacctgccgcacgattacgta
ccaggcgagcggttgcgcctggaagcgtaccgcaacattgcgcaggccgagaccgacgag
gcgctcgccgaggtccgtgatgagctggtggaccgctatggcaagctgccggttccggtg
gagaacctgatgcgggtggcggccctgcgcatccgtgcgcgtgccgtgggactgcatgat
atccagcagatcggcaaccacatcaagctggccccggcaaagatcgaggacctgcctgct
tcgcgccaggtgcgcttggaacgcctgtacccgggggctgcgaacaagccggcgctgaat
tcgatcttcattccgaagccgaagacctcgccaatcggcggcagggatctggccgacggg
gagatccttgaatgggcagagaagctgctctacgcgatcttcgagccgaccccggcagcg
aacgactga
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