Glycomyces sp. TRM65418: K3N28_04190
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Entry
K3N28_04190 CDS
T07425
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gly
Glycomyces sp. TRM65418
Pathway
gly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K3N28_04190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gly03019
]
K3N28_04190
Messenger RNA biogenesis [BR:
gly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K3N28_04190
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GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
DUF1732
Motif
Other DBs
NCBI-ProteinID:
QZD56331
UniProt:
A0A8G1J2S4
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Position
complement(914752..916443)
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AA seq
563 aa
AA seq
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MALTRPKNLGAPGALPEGALRVVPLGGLGAIGRNMTLFEYDGRLLIVDCGVLFPDVDQPG
VDLILPDFTPILDRLDDIEAIVVTHGHEDHIGAIPFLLEHKHDIPVVGSRFSVALVEAKL
RERRIKPAGIVVAENETLQLGPFGCEFLAVNHSIPDALAVAVRTEAGLVLHTGDFKMDQL
PLDGRITDLAGFARLGDQGVDLLLSDSTNAEIPGFVTSEREIGPVLDKLFQDVKGRIIVA
SFASHVHRVQQVMDAAHAHGRKVAFVGRSMVRNMAIARDLGLMQVPDGLLVSMDEAVRLP
AGEIVYMSTGSQGEPMSALGRMASGDHRHITVEAEDTVILASSLVPGNETAVYGVINRLA
RTGATVIHKDVAKVHVSGHAPAGELLYVLNVVKPSNMIPVHGEARHLQAHARLAVESGVP
EDQVIVIENGDVVDLIDGRARLVGHVPNNLVYVDGLSVGDVGEPVLSERRMLGDGGFIAA
TVVIDSENGKVVGGPTVSARGFSEDPKAFDGVLPLIDDAMERAAQDGITEAHQLQQILRR
TVGKWVNDTYRRRPMIVPHVLEV
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggccctgactcgacccaagaacctcggcgccccgggagcacttcccgagggcgcgctc
cgcgtcgtcccgctcggcgggctcggcgccatcggtcgcaacatgaccctgttcgagtac
gacgggcgactgctcatcgtcgactgcggcgtgctcttccccgacgtcgaccagcccggc
gtcgacctcatcctgccggacttcacgccgatcctcgaccgcctcgacgacatcgaggcc
atcgtcgtcacccacggccacgaggaccacatcggcgcgatcccgttcctcctggagcac
aagcacgacatccccgtcgtcggatcccgcttctccgtcgccctcgtcgaggccaagctg
cgcgaacgccgcatcaagcccgccgggatcgtcgtcgccgagaacgagaccctgcagctc
ggcccgttcggctgcgagttcctcgccgtcaaccactcgatccccgacgcgctggccgtc
gcggtccgcaccgaggccggcctggtgctccacaccggcgacttcaagatggaccagctg
ccgctcgacggccgcatcaccgacctcgccgggttcgcccggctcggcgaccagggcgtc
gacctgctgctctcggactccacgaacgccgagatccccggcttcgtgacctccgagcgc
gagatcggaccggtcctggacaagctcttccaggacgtcaagggccgcatcatcgtcgcc
tcgttcgcgagccacgtgcaccgcgtgcagcaggtcatggacgccgcgcacgcgcacggg
cggaaggtcgccttcgtgggccgctcgatggtccgcaacatggcgatcgcccgggacctc
gggctcatgcaggtgcccgacgggctcctggtgagcatggacgaggcggtgcgcctgccc
gccggcgagatcgtgtacatgtccaccggttcgcagggcgagccgatgagcgccttgggc
cgcatggcctccggcgaccaccggcacatcaccgtcgaggccgaggacaccgtcatcctc
gcgtcgtcgctggtgcccggcaacgagaccgccgtgtacggcgtcatcaaccgcctggcg
cggaccggggccaccgtcatccacaaggacgtcgcgaaggtccacgtctccggccacgcc
cccgcgggcgagctgctgtacgtgctcaacgtcgtcaagccgtccaacatgatccccgtc
cacggcgaggcgcggcacctccaggcgcacgcgcggctcgccgtcgagtccggcgttccg
gaagaccaggtcatcgtcatcgagaacggcgacgtggtggacctgatcgacggccgggcg
cggctggtcgggcacgtcccgaacaacctggtctacgtcgacgggctctccgtgggcgac
gtcggcgagccggtgctcagcgagcgccggatgctcggcgacggcggcttcatcgccgcg
acggtcgtcatcgactccgagaacggcaaggtcgtcggcggccccacggtctccgcgcgc
ggcttctcggaggacccgaaggccttcgacggggtcctgccgctcatcgacgacgcgatg
gagcgcgcggcccaggacggcatcaccgaggcgcaccagctccagcagatcctgcggcgc
acggtcggcaagtgggtcaacgacacctaccgccgccgcccgatgatcgtgccgcacgtc
ctcgaagtctga
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